Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8255 132 5e-26 seq3941 116 4e-21 seq1473 109 6e-19 >seq8255 Length=582279 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || || | || ||||||||||||||||| | ||||| || ||||||||| Sbjct 398061 ATATATGTTTCAATAAGCAAGGAATACATTTCAGAATGAATGTTCTCTATGGCAATTTGG 398002 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| |||||||| | ||||| | || | ||||||||| |||||||| | ||| Sbjct 398001 AATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATCAGA 397942 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || || ||||| || || ||||| || ||||| | ||| ||||| | | Sbjct 397941 TTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAGTAT 397882 Query 93542 TTCTCATCATCTTTAAGCTTATC 93564 | || ||| |||||||| || Sbjct 397881 CTTTCGTCAGAATTAAGCTTTTC 397859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | |||||||| ||||| | |||||||||||||||||||| || || || Sbjct 397724 ACTTCTTCTATGGTCCAAAAGGATGCCACAGCTTTTTTGTACATATCCCAAATATCAGGA 397665 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684 |||||||| || || || ||||||||||| || Sbjct 397664 TATTGAATGGGGAAAATCACAAAACGATTTGG 397633 >seq3941 Length=2671896 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 1489591 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 1489532 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| |||| | || || Sbjct 1489531 GTTCGAACCCCACACCTGGCAAAATTTTTTT 1489501 >seq1473 Length=1609630 Score = 109 bits (120), Expect = 6e-19 Identities = 76/84 (90%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC-GGGAGCGTG 126325 |||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||| Sbjct 464579 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATTCTGGGAGCGTG 464520 Query 126326 GGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||| | |||| Sbjct 464519 GGTTCGAACCCCACACTTAGCAAA 464496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556785686438840