Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6960 93.3 9e-14 seq3233 93.3 9e-14 seq721 93.3 9e-14 seq7864 91.5 3e-13 seq2226 89.7 1e-12 seq7020 87.8 4e-12 >seq6960 Length=243642 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 55723 GACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 55664 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 55663 GAGCCCCACGTTGGGC 55648 >seq3233 Length=183561 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 |||| | ||||||| |||||||||||||||||| ||||||||||||| ||||||| Sbjct 164257 GGTGTAACAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTG 164198 Query 142555 GGTTCGAGCCCCACATCGGGC 142575 |||||||||||||| | |||| Sbjct 164197 GGTTCGAGCCCCACGTTGGGC 164177 >seq721 Length=143992 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 16941 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 16882 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 16881 GCCCCACGTTGGGC 16868 >seq7864 Length=237132 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 33101 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 33042 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 33041 CCCCACGTTGGGC 33029 >seq2226 Length=814073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 || ||| |||||||||| ||| ||||||||||||||||||||||||||| | ||||||| Sbjct 200014 CAAGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCG 199955 Query 142110 ACCCCCGCCAGAGACGC 142126 | |||| |||| || || Sbjct 199954 ATCCCCACCAGGGATGC 199938 >seq7020 Length=406909 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 244308 AGCCCGGCTAGCTCAGTCGGTAGAGCATGATACTCTTAATCTCAGGGTCGTGGGTTCGAG 244249 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 244248 CCCCACGTTGGGC 244236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027694691605231