Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7770 102 6e-17 seq6463 82.4 6e-11 >seq7770 Length=449423 Score = 102 bits (112), Expect = 6e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || ||||| ||||| ||||| ||| || ||||| ||||| ||||| | Sbjct 88018 CCTCCTCGAAGACGCAGAACCAGGTGAAGAGTGGATTCTTTCTGGATGTTATAATCAGA- 88076 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | ||| ||||| ||||| |||| |||||||||||| | Sbjct 88077 AAGAGTC-CTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAG 88135 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCG 34077 | | | ||||||||| ||||| |||| | || | | |||| || |||| Sbjct 88136 GAATTCCTTCTTTGTCCTGGATTTTG-GCTTTCACGTTTTCTATTGTGTCAGAAGCTTCG 88194 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || || ||||| || || |||||||| ||||||||||||||| Sbjct 88195 ACTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 88245 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || ||||| ||||||||||| ||| || ||||||||||| ||||| | Sbjct 87334 CCACCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCG-A 87392 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||||||| || || ||||| || | || || ||||| || Sbjct 87393 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87452 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||||||||| | |||| |||| | || | | |||| || |||| Sbjct 87453 AATACCTTCTTTGTCC-TGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGA 87511 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || || ||||| || || |||||||| ||||||||||||||| Sbjct 87512 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || ||||| || | |||||| ||| || ||||||||||| ||||| | Sbjct 87562 CCTCCTCGAAGACGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCG-A 87620 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||||||| || || ||||| || | || || ||||| || Sbjct 87621 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87680 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | ||||||||| | |||| |||| | || | | |||| || |||| Sbjct 87681 AATACCTTCTTTGTCC-TGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGA 87739 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| || || ||||| || || |||||||| ||||||||||||||| Sbjct 87740 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87789 >seq6463 Length=98022 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 114389 ||||| || |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 5238 CATGTCTTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 5297 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| |||| || || ||||||||||| Sbjct 5298 CCATAACTAATTTAATGAGCCATTCG 5323 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAG--TAAGATCTAAGGAA 115586 ||||| || |||||||||||||||| ||||||||||||| || | || |||||| ||| Sbjct 5238 CATGTCTTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAATGAA 5297 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| |||| || || ||||||||||| Sbjct 5298 CCATAACTAATTTAATGAGCCATTCG 5323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397010180214382