Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7770 132 1e-25 seq6884 129 1e-24 >seq7770 Length=449423 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||| || | ||| || || || || || |||| ||| || |||| | ||| Sbjct 87795 TCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGAAAGAGT 87854 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| |||||||| || || ||||| || || || | ||||||||| |||||| |||||| Sbjct 87855 CCTACCATCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAGGAATTCC 87914 Query 199528 TTCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| ||||| || ||| |||| |||| ||| | ||||| | | ||| || || | Sbjct 87915 TTCTTTGTCCTGGAT-TTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACTTCAA 87973 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || |||||||||||||| Sbjct 87974 GTGTAATAGTTTTGCCTGTGAGTGTCTTCACAAAAATTTG 88013 Score = 118 bits (130), Expect = 2e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| || || || |||||||| | || ||||||| | ||| Sbjct 86884 CGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGAAAGAGTT 86943 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| ||||| || || || || |||||||| ||||| || ||| ||||||| Sbjct 86944 CTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCT 87003 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || |||||||| || || | ||| |||| | ||| || || | Sbjct 87004 TCCTTGTCTTGGAT-TTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCGACTTCAAG 87062 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||||||||| || Sbjct 87063 AGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCTG 87101 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || || || || || |||| || ||||||| | ||| Sbjct 88480 CGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTT 88539 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || ||||| || ||||| ||||||||||| || ||| ||| ||| Sbjct 88540 CTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCT 88599 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || || || | ||||| | | |||||| || | Sbjct 88600 TCTTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTACCTCAAGG 88659 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||||||||| ||||| Sbjct 88660 GTGATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTG 88697 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| || || || || || || || |||| || ||||||| | ||| Sbjct 87112 CGAAGACGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTT 87171 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||| || ||||| || || || | |||||| || || ||| ||| ||| Sbjct 87172 CTACCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGAATGCCT 87231 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || || || | || |||| | |||||| || | Sbjct 87232 TCTTTGTCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTACTTCAAGA 87291 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||||||||| ||||| Sbjct 87292 GTGATAGTTTTTCCAGTAAGCGTTTTCACAAAGATTTG 87329 >seq6884 Length=256371 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || | |||||||||||| || | ||||||||| | | || | |||||| Sbjct 112971 AGGACCAAATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCT 112912 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||| || ||||| | | |||||| || ||| || ||||| ||| Sbjct 112911 TCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCCTTGTCC 112852 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || || ||| |||| ||||||| || ||| || ||||| ||||| || Sbjct 112851 TGAAT-TTTAGCTTTGACGTTCTCGATTGTGTCTGATGCTTCCACTTCCAATGTGATGGT 112793 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| |||||||| || || ||||| || Sbjct 112792 CTTACCGGTGAGAGTCTTGACGAAAATCTG 112763 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| || ||||| | || | ||| || || || || | |||||| |||| | || Sbjct 114120 CGAAGCCTGAGGACTAAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAGAGTGTA 114061 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||| ||||| || ||||| | | |||||| |||||| || ||| Sbjct 114060 CGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCT 114001 Query 199529 TCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || |||||||| |||||||| || ||| | ||||||| || ||| || || || Sbjct 114000 TCCTTGTCCTGAAT-TTTTGCTTTGACATTTTCTATCGTGTCTGATGCTTCAACTTCTAA 113942 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| |||||||| || ||||||||||| Sbjct 113941 TGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATTTG 113903 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | || ||||| || |||||||||| || || |||| ||| || | ||| Sbjct 112291 TCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGACAAGGTACGTCC 112232 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| || || ||||| || || || | |||||||||||| || ||| || ||| Sbjct 112231 GTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGAATACCCTCTTT 112172 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||||||| ||| ||| |||| |||||| | | ||| || || | || || Sbjct 112171 GTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGAGTTAT 112112 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || ||||||||||| || Sbjct 112111 GGTTTTTCCAGTTAACGTCTTCACAAAAATCTG 112079 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| ||||| | |||||| || | | || | |||||||| ||||| ||||| Sbjct 112501 AGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCATCTTCAAGCTGTTTTCC 112442 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || ||||| | | ||||| ||||| || ||||| |||||||||||| || Sbjct 112441 AGCAAAGATTAATCTTTGCTGATCCGGTGGGATACCTTCCTTATCCTGAATCTTTGCTTT 112382 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || || | || |||| || || || ||||||||||| ||||| || || | ||| Sbjct 112381 GACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCTTTCCTGTCAAAGT 112322 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||| || || Sbjct 112321 TTTGACAAAGATCTG 112307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178758602667997