Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7770 127 2e-24 seq6884 114 1e-20 seq699 87.8 2e-12 >seq7770 Length=449423 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||| |||||||||||||| ||||| |||| ||||| || | Sbjct 87561 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87502 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| |||||||| || ||||| | || | Sbjct 87501 TGACACAATAGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 87443 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| || || ||||| |||| |||| || || || || || | Sbjct 87442 AACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTTTCGGATTATA 87383 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | || || ||| |||| |||||| | |||| || Sbjct 87382 ACATTCAGAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGTGG 87334 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||| |||||||||||||| ||||| |||| ||||| || | Sbjct 87789 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87730 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| |||||||| || ||||| | || | Sbjct 87729 TGACACAATAGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 87671 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || | |||| || || ||||| |||| |||| || || || || || | Sbjct 87670 AACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTTTCGGATTATA 87611 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || || ||| | || || ||||| || |||||| | |||| || Sbjct 87610 ACATTCAGAAAGAATCCACACTTCATTTAGTTCTGCGTCTTCGAGGAGG 87562 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||| |||||||||||||| ||||| |||| ||||| || | Sbjct 88245 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 88186 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| ||||||| |||||||| |||||||| | || | Sbjct 88185 TGACACAATAGAAAACG-TGAAAGCCAAAATCCAGGACAAAGAAGGAATTCCTCCGGATC 88127 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | |||| || |||||||| || || || | | || || || || | Sbjct 88126 AGCAGCGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATA 88067 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| || ||| | || || || |||| |||||| | |||| || Sbjct 88066 ACATCCAGAAAGAATCCACTCTTCACCTGGTTCTGCGTCTTCGAGGAGG 88018 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || ||||||||||| || | || ||||| || | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | |||| |||||||| ||||| || |||||||| |||| || Sbjct 87045 AGATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATCA 86986 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| || || |||||||| || || | | || || ||||| || Sbjct 86985 GCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATAA 86926 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||||||| | || || || || || |||| Sbjct 86925 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCG 86890 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || |||||||||||| | || || || || || Sbjct 88700 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACCATCACCCTTGAGGTAGAAGCTTCC 88641 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || || | || ||||| || ||||| | || || Sbjct 88640 GACACTATAGAGAATGTCAAAGCCAAGATACAAGATAAAGAAGGCATTCCTCCTGATCAG 88581 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || ||||| ||||| || | | || || ||||| || Sbjct 88580 CAGCGTCTGATCTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTATAAT 88521 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || ||| |||| ||||| Sbjct 88520 ATCCAGAAAGAATCTACACTTCATCTGGTTTTGCGT 88485 >seq6884 Length=256371 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || || || || || | || || ||||| | Sbjct 112532 ATGCAGATTTTTGTCAAAACCTTGACAGGAAAGACTATTACTTTGGAAGTAGAGGCTTCT 112591 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | |||| | ||||||| ||||||||||||||||| | || || Sbjct 112592 GATACGATTGAGAATG-TTAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCTGATCA 112650 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | |||| ||| ||||| |||||||| |||| ||||| ||| ||| ||||| Sbjct 112651 ACAGAGATTGATTTTCGCTGGCAAGCAGCTGGAGGACGGACGCACGCTCTCCGATTACAA 112710 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 || ||||||||| | || |||||||| || Sbjct 112711 TATTCAAAAGGAATCCACTCTGCATTTAGT 112740 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || || |||||||| || |||| || || ||| | Sbjct 112076 ATGCAGATTTTTGTGAAGACGTTAACTGGAAAAACCATAACTCTCGAAGTTGAAGCCTCT 112135 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| || | ||||||||||| ||||| | ||||| Sbjct 112136 GACACCATCGAGAACG-TAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCACCTGACCA 112194 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || || ||||| || || |||| || ||| | || || || Sbjct 112195 GCAGCGTTTGATTTTTGCTGGAAAACAACTTGAAGACGGACGTACCTTGTCTGATTATAA 112254 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || |||||||| || | ||| | ||||| Sbjct 112255 TATCCAAAAGGAATCCACTCTTCATTTGGTCCTCAGATTGCGTGGCGG 112302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| | || || || || | Sbjct 112760 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTGGAAGCATCA 112819 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||| || || || || | || || Sbjct 112820 GACACAATCGAGAACG-TCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCTCCAGATCA 112878 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || |||||||| || || | ||||| ||| ||||||||| Sbjct 112879 GCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGCACACTCTCCGACTACAA 112938 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||| || ||||| |||| | |||||||| || || || Sbjct 112939 CATTCAGAAGGAGTCGACTTTACATTTGGTCCTTCGGTT 112977 >seq699 Length=139783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || || |||||||| |||| ||||| ||| | Sbjct 6154 ATGCAGATTTTCGTGAAAACCCTCACTGGTAAGACCATCACTCTCGAGGTCGAAGCCTCT 6095 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| || |||| || ||||||||||| || | || || Sbjct 6094 GATACCATTGAAAATGTGAAAGCTAAGATCCAGGATAAAGAGGGAATCCCACCAGATCAG 6035 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || |||||||| | || || | || || ||| || || ||| Sbjct 6034 CAACGACTTATCTTTGCTGGCAAACAATTAGAAGATGGACGTACTCTCTCTGATTATAAC 5975 Query 38424 ATCCAAAA 38431 || ||||| Sbjct 5974 ATTCAAAA 5967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500105332941440