Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1237 361 4e-94 seq9469 127 2e-23 seq3941 118 8e-21 >seq1237 Length=369427 Score = 361 bits (400), Expect = 4e-94 Identities = 770/1131 (68%), Gaps = 23/1131 (2%) Strand=Plus/Plus Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 ||||| ||||||| ||||| | |||||| || ||||||||||| || || ||||| | Sbjct 282745 ATTAAACTTACCATTCGCATCGATATCAAAAGTAACTTCAATTTGTGGTACACCTCTAGG 282804 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 || ||||| || || || | ||| | || ||| |||| ||||| || || | Sbjct 282805 TGCCGGTGGTATTCCAGTTAATTCGAATTTACCAAGAATATTGTTATCCTTGGTCATCGC 282864 Query 517387 TCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA 517446 || || || ||| | | ||||| | ||| | | ||||||||| ||||| || ||||| Sbjct 282865 TCTCTCCCCTTCGTAGACTTGGACAAGTACTCCTGGTTGATTATCGGAATATGTAGTAAA 282924 Query 517447 TACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 517505 | ||||| ||| | | || || ||||| || || | || | | | ||||| | || Sbjct 282925 TG-TCTGGGTTTGCTTCGTTGGTATCGTTGTATTCCTCTTGATCAAAGTTGTCATGACAC 282983 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 | || || ||||| | || | || | |||||| || || | ||| | | || ||||| Sbjct 282984 CGCCAGCGGTTTCAATGCCCAATGACAAAGGAGTCACGTCTAGTAGAAGTAGATCTTGAA 283043 Query 517566 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625 || ||| | | |||| | |||||| || |||| || || ||||| ||||| | Sbjct 283044 CTTCCTCAGACTTGTCACCATGTAAAATAGCCGCCTGAACTGCTGCGCCATAAGCAACGG 283103 Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 517685 ||||||| ||||||| | || ||| || | |||||| ||||| |||| | ||| | || Sbjct 283104 CTTCATCCGGATTAATGGATTTATTCAGCTCTTTACCGTTGAAGAAATCTTGAAGTAATT 283163 Query 517686 GTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 ||| | ||| || || | | || || || |||| || || || || || | Sbjct 283164 -TCTGAATCTTTGGTATCCTGGTGGAGCCACCGACTAGAACTATGCTGTGAACTTGAGCC 283222 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || |||| || | ||| | |||| || || ||||||||| ||| |||| Sbjct 283223 TTGTCCATCTTCGCATCTCTAAGCGCTTTCTCGACAGGTTCAAGAGTGCTTCTGAACAGA 283282 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTT 517862 || | || |||||||||||| | ||||| || || ||| | || || || || |||| Sbjct 283283 TCGGCGCAGAGTTCTTCGAATCTGGCTCTGGT--GATTGATGTGTAGAAATCGATACCTT 283340 Query 517863 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 517922 | ||||| || |||| ||||| | | ||| ||||| ||| || || | || || | Sbjct 283341 CAAACAACGAGTCAATCTCAATGCTTGCTTGCGTCGACGAACTTAATGTCCTCTTCGCCC 283400 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-TCAAATCTGTTTTA 517981 |||||| ||||| ||||| | || | ||| | || | || |||| || | || Sbjct 283401 TTTCACAGGCTGTTCTTAGACGTCTCACAGCTCTCT-TGTTAGAGCTCAAGTCCTTCTTG 283459 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 518041 || ||||||||||| |||| || | |||| | ||||| || || || ||||| Sbjct 283460 TACTTTCTCTTGAATTCTTGCACGAAGTGGTTTACCATTCGATTGTCGAAGTCCTCACCA 283519 Query 518042 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 518101 || | | || | || | ||||| | |||| | ||| | ||||| || | | || | Sbjct 283520 CCGAGATGCGTGTCGCCAGCCGTAGATTTTACCTCGAAGATACCATCCTCGATTGTCAGA 283579 Query 518102 AGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 518161 | | || ||| ||| ||||| |||| ||||| || || || ||| |||| | || Sbjct 283580 ATTGACACGTCAAAGGTACCACCGCCCAAGTCAAAGATCAGGACGTTCTTTTC---GCCT 283636 Query 518162 TGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 | || ||||| ||||||||||| | ||||| ||||| |||||||| || || || Sbjct 283637 GCGGCTTTCTTATCGAGACCATACGCTATCGCAGCTGCAGTCGGTTCATTTATTATCCTA 283696 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | |||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct 283697 AGAACATTTAGACCAGCAATAGCACCAGCATCTTTCGTCGCCTGCCTTTGAGAATCGTTG 283756 Query 518279 AAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTT-- 518335 ||||| || || |||||||||||||| | || || |||| |||| ||| ||||| Sbjct 283757 AAATAAGCTGGCACAGTAATAACGGCGTTCGTCACGGTCTTGCCCAA-ATA--CGCTTCC 283813 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 || |||| ||||| || ||| || ||| || || | || || |||||| Sbjct 283814 GCTGTTTCCTTCATCTTCGTTAGAACCATGGAGGACACTTCCTC-GGGGAA 283863 >seq9469 Length=914958 Score = 127 bits (140), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 870791 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 870847 ||||||| | ||||| |||| ||| ||| || ||||| |||||||||||| | ||| Sbjct 732309 AAGAAAAGAGTAATTGTGGATTTTTCCAGTCCCAACATTGCCAAAGAAATGCATGTGGGA 732250 Query 870848 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 870907 || |||||||| ||||| ||||| || ||||| ||| |||||||| | ||||| Sbjct 732249 CACTTAAGATCTACTATAATTGGAGACAGTATTTCAAGGCTATTAGAATATTTAGGACAT 732190 Query 870908 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 870967 ||||| | | | |||||| | ||||| ||||| || || |||||||||||||| || Sbjct 732189 GATGTATTAAGACTCAATCATATAGGTGACTGGGGTACGCAGTTCGGTATGTTAATAGCA 732130 Query 870968 TATATTAAAAATAA 870981 || || || |||| Sbjct 732129 CATCTTCAAGATAA 732116 >seq3941 Length=2671896 Score = 118 bits (130), Expect = 8e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 ||| |||| | ||| || | ||||| |||| ||||||||||||||||||||||| | Sbjct 1986272 TTTATCTTCTTGTTTGTCCATGCCATATGCAAGTGCAGCAGCAGTTGGTTCATTAATTAC 1986331 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 || | ||||| | ||||| || || ||||| || || ||||||| ||||||||| Sbjct 1986332 TCGAAGCACATTCAATCCAGCTATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATC 1986391 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 || |||||||| || ||||||||||| |||| ||||| || | ||||| Sbjct 1986392 ATTGAAATATGCTGGCACAGTAATAACAGCATTTTTTACTGGAGTATTCAAGTAAGCTGC 1986451 Query 518335 TGCCGTTTGTTTCATTTT 518352 || |||| ||||||||| Sbjct 1986452 AGCTGTTTCTTTCATTTT 1986469 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || |||||||| || || ||||||||||||||||||| | ||| |||| || || || Sbjct 1986294 CCATATGCAAGTGCAGCAGCAGTTGGTTCATTAATTACTCGAAGCACATTCAATCCAGCT 1986353 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| |||| ||||| ||||||||||| |||||| Sbjct 1986354 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCATTGAAATATGCTGGCACAGTA 1986413 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 1986414 ATAACAGCATTTTT 1986427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780286915034446