Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq10641 96.9 5e-15 >seq10641 Length=139898 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 104862 TTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAAC---TTGTTAAATGAAA 104918 || |||||||| | ||| | || || || | |||||||| || |||| | || | Sbjct 121200 TTGAAGAATTACTGTGGTTTATCAAGGGATCGACAAATTCCAAAGAATTGTCAGATAAG- 121258 Query 104919 TTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGATTTC 104978 |||||| | | ||| |||| ||||| |||||| ||||| |||||||| || || | Sbjct 121259 --GGTGTTCATATTTGGGATGAAAATGGCTCACGTGCCTTTTTGGATTCTTGCGGGTT-C 121315 Query 104979 ACTT-TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGA 105037 || | || | ||||||||||| ||||| | |||||||| ||||||||||| ||| Sbjct 121316 ACAGATAGAGAGGAAGGTGATTTGGGACCTGTCTATGGATTCCAATGGAGACACTTTGGT 121375 Query 105038 GCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTAT 105081 ||| | |||| || || || ||||| || |||||||| Sbjct 121376 GCTGAGTATAAAGATATCCGCACAGATTATACTGGACAAGGTAT 121419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658314389638360