Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4527 116 4e-21 seq8255 113 5e-20 seq9256 89.7 6e-13 >seq4527 Length=1270594 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || ||||||||| | | | ||| | | ||||||| ||||| || ||||| |||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 || | || || || | || |||||||| ||| | || || || | ||| ||| Sbjct 575403 TATCTTTCAGACAAATAATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAATA 575462 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || ||| | ||| ||||||| |||||||||||| || || ||| ||| |||||| Sbjct 575463 CCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTTC 575522 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCA 48818 || | ||| | | || | ||| |||||||||| ||| || || |||||| |||| Sbjct 575523 AACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATCA 575582 Query 48819 TTAATAATTGATGAATTTATTCTTTCC 48845 | ||| || | |||| || | ||||| Sbjct 575583 TAAATTATGGCAGAATCTAGTTTTTCC 575609 Score = 104 bits (114), Expect = 3e-17 Identities = 179/256 (70%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 47833 TTAA-TTTATTAAAATCAAAC---TTGTTATT--TAT-AACAAACCTATTAAGTGCTATA 47885 |||| ||||| |||||| || |||||||| ||| ||||||| |||| | ||| ||| Sbjct 574325 TTAAGTTTATCAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATA 574384 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 ||||| |||||||||||||| || || ||| || ||||| || | ||||| || Sbjct 574385 GATGCCAGATTACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCAC 574444 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTACATGCG 48002 | || | |||||||| ||||| | | ||||||||| || ||| || Sbjct 574445 AAGTTGCTGCATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTG---CAATGA 574501 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAA 48062 || || ||||||||| |||| |||||||| |||| || ||| | || | ||| Sbjct 574502 TCTTTATAAAGCATATAAGGAGTTCCAGTCTCTACTTGCGATCTGAGAATGGCAACCCAT 574561 Query 48063 ACAGTCCTAGCCTTTA 48078 |||| |||||||| || Sbjct 574562 ACAGCCCTAGCCTCTA 574577 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/157 (75%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACT 47368 ||||||||| || || |||||||| || | ||| ||| || ||| |||||||| Sbjct 573624 ATGAGGATTGACGATGACGAATTCTCCCGACAATAC---ACGTCTTACATAGATATTACT 573680 Query 47369 TGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 || || ||||| || ||||| |||||||| || ||||| || || || || || ||||| Sbjct 573681 CGTGTACGGTTCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCAT 573740 Query 47429 GGATGCAACTAATAAGCTA-TTTCTTACTCCATATTT 47464 | ||||| || |||| | ||||||||||| | ||| Sbjct 573741 AGGTGCAATCAA-AAGCGAATTTCTTACTCCGTGTTT 573776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 || |||||| | | ||||||||| || | |||| | | || |||||| |||||| | Sbjct 574720 TAATATATAGTTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTG 574779 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 |||||||||| ||||| |||| ||| | ||| | |||||| | ||||||||||| Sbjct 574780 GACACATCAAGCTCCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCC 574839 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTC 48258 | ||| | |||||| || |||| || Sbjct 574840 ATAGACCATAAAATAAGTCTCTAGCTC 574866 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 48917 ACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATAT 48976 |||||| ||||||| || |||||||| || ||||| | | || || ||||||||||| Sbjct 575794 ACTAAAATTTTTTTTAGTCTCTTTATGTAGGTTAGACACATCAATCCTTGCAGCTAATAT 575853 Query 48977 AGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCTA 49035 ||||||||| |||||| | || | ||| ||| | |||| ||||| | |||||| Sbjct 575854 AGCATAATCGGGATGATTAGTCG-CCATGGTAGCTGCAGTTTCAGCTGCAAGATTATCTA 575912 Query 49036 ATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGC 49084 || |||||||| || | ||||| || | || |||| ||||| Sbjct 575913 ATATGACTGTAGTTACTCCAGAATATAAACCGCGTATTACTTGAATTGC 575961 >seq8255 Length=582279 Score = 113 bits (124), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 18762 TAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTT 18821 || ||||| ||||||||| | | | | ||||||||| || |||| || || || Sbjct 398867 TACTTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCA 398808 Query 18822 CATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTG 18881 ||| | ||||||||||||||| |||| || |||| ||| | ||| | |||||| || Sbjct 398807 CATGAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTG 398748 Query 18882 TTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGG----T 18937 ||| || | ||| || || |||||| ||| || | |||| |||| || | Sbjct 398747 TTCAATTTCTACAGCATCCATTATAATTGATTTCAC---ACGTTCA-AAGGATGGTTTTT 398692 Query 18938 ATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || || ||||||||||| |||||||||||||| ||||||| ||||| Sbjct 398691 GTACAATGTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 398644 >seq9256 Length=299688 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/188 (69%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 47541 CCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCA 47600 |||||||| || ||| ||| ||||||| | ||| | ||| | |||| | |||| Sbjct 296523 CCTTTACTAATTGGACTACCTTTATATGATACATATGAACCTTTCTTGATAGCTATTTCA 296582 Query 47601 CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT 47660 ||||| ||||| || |||| |||||| | || ||||| |||| || || || || | Sbjct 296583 CAACTAGCTTCTAAAGCACCATAATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGA 296642 Query 47661 GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACA 47720 |||||| |||||| ||||| |||| |||||| |||||||| ||| Sbjct 296643 GCTTCTTGGCTTTCAAATGGATATCTCATTAAGATAAATGCATCTGCTAATCCTTGTACA 296702 Query 47721 CCAATACC 47728 |||||||| Sbjct 296703 CCAATACC 296710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| | |||||||| |||||||| ||||||||||| | |||||||| ||||| | Sbjct 298332 CACTAAAAGTCTTTTTTGTCTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAA 298391 Query 48976 TAGCATAATCTGGATG 48991 | |||||||||||||| Sbjct 298392 TCGCATAATCTGGATG 298407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562032978549240