Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq1414 118 1e-21 >seq1414 Length=241045 Score = 118 bits (130), Expect = 1e-21 Identities = 156/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 197102 AGAAAGCG-CCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCACC 197160 ||||||| || || || || ||||||||||| ||| | | || ||||| || ||| Sbjct 29443 AGAAAGCCACCATAAGTGCCTGTTCTCTTTCCTTTGCCGATATAACCACCGATTACAACC 29384 Query 197161 AGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAGCTTCTA 197220 | || || || |||| ||| || |||| |||||||| ||||| || | ||| |||| Sbjct 29383 ACGTCAAGCGTATCGCCCACACCGTCCAAATAATCTTTTTTCAGCTTCAACCAATTTCTC 29324 Query 197221 GATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCATCAATCCCTCG 197280 |||| ||| || ||||| |||||||| | | || || ||||| | ||| || ||||| Sbjct 29323 GATCGCTTCGCGATCTCATAGGTTGCTTCCTCCTCGAGCGTCTTCACCATTAAACCCTCA 29264 Query 197281 CAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTG 197315 |||| | ||||||| | | || || |||| |||| Sbjct 29263 CAATTTCCCTTCACAGATTCGTCCAAGAAAATTTG 29229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676638317636080