Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6884 125 5e-24 seq7770 109 4e-19 >seq6884 Length=256371 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||| | ||| |||||||||||| |||||||| || Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | ||| || || ||||| || | || || ||||||| || Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||||| ||| ||| | | | ||||| |||||||| Sbjct 112410 ATACCTTCCTTATCCTGAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCACT 112351 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| || || ||||| ||||||||||| ||||| |||||||| Sbjct 112350 TCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| || ||||||||||||||||| || || | || Sbjct 112749 AGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAGAGCGTGCGT 112690 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || |||| || ||||||||| | |||| ||||| Sbjct 112689 CCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGAATTCCCTCT 112630 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | | || || ||||| || |||| ||| Sbjct 112629 TTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAAAGTA 112570 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| ||||| |||||||||||||| Sbjct 112569 ATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | || | ||||| ||| ||||| |||||||| ||||| || Sbjct 114354 CCGCCTCTAAGTCGAAGTACAAGATGTAATGTGGATTCTTTCTGAATATTATAATCTGAC 114295 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| || | ||||| || ||||| |||| || ||| ||||| | ||| Sbjct 114294 AATGTGCGTCCGTCCTCGAGTTGCTTGCCCGCAAAAATCAATCTCTGCTGATCAGGAGGA 114235 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||| ||||| ||| || || ||| | | | ||||| || || ||| Sbjct 114234 ATGCCCTCTTTGTCTTGAATTTTCGCCTTGACATTCTCGATTGTATCTGAAGCTTCTACC 114175 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || ||||||||||| || ||||||||||| Sbjct 114174 TCCAAAGTGATAGTTTTGCCTGTCAAAGTTTTGACGAAAATCTGCAT 114128 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| || ||||||||||||||||| || | | | || Sbjct 113205 AGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGG 113146 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | || || || ||||| || | || ||||||||||| |||| ||| || Sbjct 113145 CCGTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGAATGCCTTCT 113086 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| ||| | | | ||||| || || || |||| || Sbjct 113085 TTATCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTG 113026 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||| || |||||||||||||| Sbjct 113025 ATTGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| || ||||||||||||||||| |||| | || Sbjct 113661 AGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGT 113602 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || ||||| || ||||| |||| || ||| ||||||| || | ||| || Sbjct 113601 CCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCT 113542 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||| ||| | | | ||||| || || || |||| || Sbjct 113541 TTATCCTGAATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTG 113482 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||| || |||||||||||||| Sbjct 113481 ATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| ||||||||||| || | ||| | || || | ||| || || ||||| Sbjct 114090 TCTTTCTGAATGTTGTAATCAGAGAGTGTACGACCATCTTCAAGCTGTTTTCCAGCAAAG 114031 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| ||||||| || | ||| |||||||| ||| ||| ||| ||| Sbjct 114030 ATCAATCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTTTTGCTTTGACATTT 113971 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| || || || || | || || ||||| || || | ||| || ||| Sbjct 113970 TCTATCGTGTCTGATGCTTCAACTTCTAATGTGATAGTTTTACCAGTGAGAGTCTTGACA 113911 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 113910 AAAATTTGCAT 113900 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || ||||| ||||| |||||||| | | || |||| || Sbjct 112284 ACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGACAAGGTACGTCCGTCTTCA 112225 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| |||| ||||| || || | |||| ||||| ||||| | Sbjct 112224 AGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGA 112165 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||||| | | | || || || || || || | || || |||||| Sbjct 112164 ATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGAGTTATGGTTTTT 112105 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || |||||||||||||| ||| Sbjct 112104 CCAGTTAACGTCTTCACAAAAATCTGCATGGTG 112072 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| || ||||||||||||||||| |||| | || Sbjct 113889 AGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGT 113830 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || ||||| || ||||| |||| || ||| |||||||| || | ||| || Sbjct 113829 CCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGTAGGGAAGCCTTCT 113770 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| | ||| | | | |||| || || || |||| || Sbjct 113769 TTATCCTGAATTTTTGCCCTAACATTCTCTATTGTACCTGATGCTTCGACTTCCAATGTG 113710 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || | | |||||| |||||||||||||| Sbjct 113709 ATTGTTTTACCGCTGAGAGTTTTGACAAAAATCTGCAT 113672 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || || || ||||| || ||| || ||||||||||||||||| || | | | ||| Sbjct 113433 AGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGA 113374 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | || || | ||||| |||| || ||| ||||||| | | ||| || Sbjct 113373 CCGTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGTGATGCCTTCT 113314 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || | ||| ||| ||| ||| | | | || || || || | |||| || Sbjct 113313 TTAACCTGAATTTTTGCTTTAACATTCTCTATCGTATCAGATGCTTCGATTTCCAATGTG 113254 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||| || |||||||||||||| Sbjct 113253 ATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113216 >seq7770 Length=449423 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 ||||| || | || ||||| || || || || || || ||||||||||| || ||| Sbjct 86875 TCGCCTCCACGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCA 86934 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 || ||| ||| | || || | ||| ||||| ||||| || || || || ||||| | Sbjct 86935 GAAAGAGTTCTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGA 86994 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| || |||||||| || ||| ||||||| | | | ||||| || || Sbjct 86995 GGAATTCCTTCCTTGTCTTGGATTTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCG 87054 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| ||||| || || | |||||| |||||||||||||| Sbjct 87055 ACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCAT 87104 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||| ||| || || ||||| || ||||| || ||||| ||| ||| | Sbjct 87115 AGACGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTTCTA 87174 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| || || || ||||| || | ||||||||||| | |||| ||| || Sbjct 87175 CCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGAATGCCTTCT 87234 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | || ||||| || || || || | || Sbjct 87235 TTGTCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTACTTCAAGAGTG 87294 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | ||||| ||||| || ||||| Sbjct 87295 ATAGTTTTTCCAGTAAGCGTTTTCACAAAGATTTGCAT 87332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887500872493