Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5898 107 4e-18 seq8255 87.8 3e-12 >seq5898 Length=163003 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||||| || || || ||||| |||| | |||||| || ||||||||||| ||||| Sbjct 58196 CTTGAGCAGTTTGACCTTGTCCTCGAGCCTGGAGATGCGCTCGAGTTTGCGCCGTCGGCA 58137 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||||| ||| ||| | ||| |||||| ||||||| Sbjct 58136 CTTGGAGGCGGCCACGCGGTTCCTCTGTCGCTTCCTCTCCAGCTTGATCTTCTCCTGGTT 58077 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||||| |||||||| ||| Sbjct 58076 CTCCATATCGATCGGTGAC 58058 >seq8255 Length=582279 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| ||||| || | |||||||| || || ||||| || ||||| | || ||| Sbjct 398037 TACATTTCAGAATGAATGTTCTCTATGGCAATTTGGAATCCATAGAAACAACGTGCTTCA 397978 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | | |||||| ||||||||| | |||||||||||| || || ||||| ||| Sbjct 397977 GCAATTTTTACTTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCAGAA 397918 Query 48545 GCAGCAAAGAAGGCAAGGACATG 48567 ||||||||||| || | |||||| Sbjct 397917 GCAGCAAAGAATGCCAAGACATG 397895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931407147869440