Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4096 118 3e-21 seq3694 91.5 4e-13 >seq4096 Length=474101 Score = 118 bits (130), Expect = 3e-21 Identities = 210/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || ||||||||||| || ||||| || | ||||| || || ||| Sbjct 216765 TCCATAGCCTTTATCAAACGACGCTGGATGTAACCGGTCTCGGCCGTTTTCACGGCGGTA 216824 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| |||||||||||||||||||||| | | ||| ||| ||| || || Sbjct 216825 TCGATAAGACCCTCACGACCACCCATAGCATGGAAATAGAATTCTGACGG-CGTGAGTCC 216883 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | | ||| |||| || ||||| || | |||||| | |||| |||| | || Sbjct 216884 GGCAAGATACGAGTTCTCGACAAAACCTCGAGACTCGGGTCCGTAGTCGTCCTTGATGAA 216943 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||||| || || | || | ||| | || || || || || |||||||| ||||| Sbjct 216944 ATGTGGGAGCGTTCGTTTGCGGAAACCGAAGGGTATTCGTTTACCCTCAACGTTTTGCTG 217003 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTAC 302873 || | || | || | ||| ||||| || | | ||||| ||||||| ||| Sbjct 217004 ACCTACACAAGCGATAACCTGAGAAATGTTGATGTTGGAACCCTTCGAGCCAGATACTAC 217063 Query 302874 CATA 302877 |||| Sbjct 217064 CATA 217067 Score = 91.5 bits (100), Expect = 4e-13 Identities = 126/172 (73%), Gaps = 7/172 (4%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| |||| || |||||||||||||||||||||||||| || || |||||| |||| | Sbjct 217850 TTGTGGCACGTGCAAATTCATCTCATCACCGTCAAAATCCGCGTTGTACGGCGATGTG-C 217908 Query 303687 CGC-AACGTTCATCCGGAAAGTATCACCCTGCATCA-TAACACGGGCTTTATGACACATC 303744 || | ||||| ||||| ||| | | ||| || | ||| | ||||| |||| Sbjct 217909 AGCTCAGATTCATGCGGAACGTACTCCACGGCAGCACTTTGACGCG----ATGACCCATC 217964 Query 303745 ATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796 || |||||| | || | ||| || |||||||| || | ||| | ||||||| Sbjct 217965 ATTGACATTTTATGCAAAGTCGGTTGACGATTAAAGATAACGAGATCACCGT 218016 >seq3694 Length=319273 Score = 91.5 bits (100), Expect = 4e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 251829 CTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTC 251888 |||| ||| || | |||||||||||| || ||||||||||| ||||| || || || Sbjct 233920 CTCTATCAAGTGACCAATAGTCATACGAGAAGGGATAGCATGGGGGTTGATAATAATATC 233861 Query 251889 GGGTTTCAGTCCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATA 251946 ||| | ||||| || ||| | ||| ||||||| ||| | || ||| || | || Sbjct 233860 GGGAGTAAGTCCCTC-GCATGAGAACGGCATAT-CTTCTTGTCTATATTGAATGCCGCAT 233803 Query 251947 GTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTA 252006 || ||||||||||||||||| || || || |||||||| ||| || ||||| Sbjct 233802 GTACCCTTTTGTCCGTGACGTGAGGCAAATTTGTCACCAATTTGTGGAATACGTACACTG 233743 Query 252007 CGAAGGCGAACCTTACAGAAGTTGTAACCATCACCGTT 252044 || | |||| || || || || || || |||| ||| Sbjct 233742 CGTACTCGAATTTTGCAAAATTTATATCCTTCACTGTT 233705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471614106958567