Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8255 257 1e-63 seq7770 104 2e-17 seq6884 100 2e-16 >seq8255 Length=582279 Score = 257 bits (284), Expect = 1e-63 Identities = 321/436 (74%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| |||||||||| ||| ||||||| |||||||| | | | ||| |||| Sbjct 392980 CGGTGGGTTTTTCAAAATGTAGGTGTTCAGCTTATGATTGCTTTCCAAAAGGCCATGATG 392921 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 || || ||||||||||| || |||| || ||| || || || || || |||||| Sbjct 392920 CCCACAAGCTTTGCAGCCTTGCGAGATCGTGCCCTTCTT--CGAACTGACCATCAGCTCA 392863 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || ||||| ||||||| | ||| | || || || |||||||| |||| Sbjct 392862 GTTTCCGGATTATCACAAGCCGGACATAGAACATATTTCCGAATAAAACCATCCAGCAAA 392803 Query 34381 TCCTGTAACTTAACGGAG--TCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 |||||||| || || || || || || |||||||||||||| || ||||| ||| ||| Sbjct 392802 TCCTGTAATTT--CGTAGCATCATGCGATCCGTTGACGATGAAGCGCTCGTTCTTGAAAT 392745 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | || || || ||||| || ||||| ||||| || || ||||| || ||||||||| Sbjct 392744 CAAATTGAGTCTGTGCGCCTAGTTCGCAGCCGAAATATTTGGTCGGATATGTGGCCGGAC 392685 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | |||| |||||| || | || ||| ||||| || || || ||||||||||| || | Sbjct 392684 GACCAATCGCCTTAGCCACATCCACCATATTGACTATTACTGTTTTGATGCCGTTTCCTT 392625 Query 34559 TTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | ||||| |||||||| |||||||||||| || ||||| ||||| || || |||| Sbjct 392624 TACCTTCCACCTTGGCCTGGATGCGCGGCATCTTATAGCGATAGAAGGCATCGCTGACAT 392565 Query 34619 TGCGGTTAACGTTCAC 34634 |||| || || || || Sbjct 392564 TGCGATTGACATTTAC 392549 >seq7770 Length=449423 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| |||||| | || |||||||||||||| | ||| || ||| | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | ||||| | | | |||||| || || ||||| ||||| | || |||| Sbjct 87045 A-GATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATC 86987 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| | || |||| ||| ||||||||||| || |||| |||||| | | || || | Sbjct 86986 AGCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATA 86927 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | |||||||| |||||||| | ||| | || || |||| || || || Sbjct 86926 ATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGTGGAGG 86878 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| ||||| | || || ||||| || || | ||| || || Sbjct 87333 AATGCAAATCTTTGTGAAAACGCTTACTGGAAAAACTATCACTCTTGAAGTAGAAGCTTC 87274 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| |||||||||||| | || ||||| Sbjct 87273 AGATACTATAGAGAATGTCAAAGCTAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCA 87214 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| ||| || ||||| ||||| |||| ||||| | | || || || Sbjct 87213 ACAGCGTTTAATTTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTATAA 87154 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || ||||||||||| | || |||| || | || || || |||| Sbjct 87153 TATCCAGAAAGAATCTACACTTCATCTGGTCTTGCGTCTTCGTGGAGGAA 87104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || ||| | || |||||||| ||||| | ||| || || Sbjct 88473 AATGCAGATCTTTGTGAAGACTCTTACAGGCAAAACTATTACTCTTGAAGTAGAAGCTTC 88414 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| || ||| ||||||||||| | ||| |||||| Sbjct 88413 AGACACCATAGAAAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATTCCCCCGGATCA 88354 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | |||| ||| || |||||||| || |||| || || | | ||||| || Sbjct 88353 GCAGCGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGTAGGACTCTTTCTGATTATAA 88294 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || ||||||||||| | ||| | || | | || ||||| |||| Sbjct 88293 CATCCAGAAAGAATCTACACTTCACTTAGTTCTGCGTCTTCGAGGAGGAA 88244 >seq6884 Length=256371 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||||||||| || || || ||||| || | ||| |||| | Sbjct 112303 AATGCAGATCTTTGTCAAAACTTTGACAGGAAAGACCATCACGTTGGAAGTGGAGGCATC 112362 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || ||| |||||| || || ||||| | || |||||| Sbjct 112363 AGATACAATTGAGAATGTCAAAGCAAAGATTCAGGATAAGGAAGGTATCCCACCGGATCA 112422 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| || |||||||| || |||| | || | | |||||||| Sbjct 112423 GCAAAGATTAATCTTTGCTGGAAAACAGCTTGAAGATGGTCGCACGCTTTCCGATTACAA 112482 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||| || || ||||| |||| Sbjct 112483 CATTCAAAAAGAGTCCACTTTGCATTTGGT 112512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 |||||||| |||||||| ||| | || || ||||| || || | ||| || || | | Sbjct 113900 ATGCAAATTTTTGTCAAGACTCTCACTGGTAAAACTATCACATTAGAAGTTGAAGCATCA 113959 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| || ||| ||||| |||||| | || |||||| Sbjct 113960 -GACACGATAGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGCATCCCTCCGGATCA 114018 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | ||| || |||||||| || |||| | ||| | | |||||||| Sbjct 114019 GCAGAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGTCGTACACTCTCTGATTACAA 114078 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 |||||| ||||||||||| ||||| Sbjct 114079 CATTCAGAAAGAATCTACTTTGCA 114102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || |||||||| || || | || || || Sbjct 114128 ATGCAGATTTTCGTCAAAACTTTGACAGGCAAAACTATCACTTTGGAGGTAGAAGCTTCA 114187 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||| ||| |||||||| ||| | || ||||| Sbjct 114188 GATACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 114247 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| |||||| || || || ||||| | | ||| || | ||||| || Sbjct 114248 CAGAGATTGATTTTTGCGGGCAAGCAACTCGAGGACGGACGCACATTGTCAGATTATAAT 114307 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| |||||||| || || || Sbjct 114308 ATTCAGAAAGAATCCACATTACA 114330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412787305007963