Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7770 109 4e-19 seq6884 104 2e-17 >seq7770 Length=449423 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| |||||| | ||||||||||||||||| | ||| || ||| Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | |||||| ||| || || || ||||| | || ||||| Sbjct 87045 AGATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATCA 86986 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || |||| ||| ||||||||||| || || | || ||| | | ||||| || Sbjct 86985 GCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATAA 86926 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| ||||| | ||| | || ||| || | || || || Sbjct 86925 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGTGGAGG 86878 >seq6884 Length=256371 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||||||||| ||||| || ||||| || | ||| |||||| Sbjct 112303 AATGCAGATCTTTGTCAAAACTTTGACAGGAAAGACCATCACGTTGGAAGTGGAGGCATC 112362 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||||| ||||| ||||| | || |||||| Sbjct 112363 AGATACAATTGAGAATGTCAAAGCAAAGATTCAGGATAAGGAAGGTATCCCACCGGATCA 112422 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| || |||||||| || || | || | | || ||||| Sbjct 112423 GCAAAGATTAATCTTTGCTGGAAAACAGCTTGAAGATGGTCGCACGCTTTCCGATTACAA 112482 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| ||||| || ||||| |||| Sbjct 112483 CATTCAAAAAGAGTCCACTTTGCATTTGGT 112512 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||| | || || ||||| || || | ||| || || Sbjct 112988 ATGCAGATTTTTGTCAAGACTCTTACCGGTAAAACAATCACATTGGAAGTCGAAGCATCA 113047 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| |||||||||||| | || |||||| Sbjct 113048 GATACGATAGAGAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCGGATCAA 113107 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| ||| || ||||| || || |||| | || || | || ||||| Sbjct 113108 CAGAGATTAATTTTTGCTGGAAAACAACTCGAAGACGGCCGCACTTTGTCAGATTACAAT 113167 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||||| || || |||| Sbjct 113168 ATTCAAAAGGAATCCACTCTGCA 113190 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||| | || || ||||| || || | ||| || || Sbjct 113900 ATGCAAATTTTTGTCAAGACTCTCACTGGTAAAACTATCACATTAGAAGTTGAAGCATCA 113959 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||| ||| || || |||||| | || ||||||| Sbjct 113960 GACACGATAGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGCATCCCTCCGGATCAG 114019 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || |||||||| || || | ||| | | || |||||| Sbjct 114020 CAGAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGTCGTACACTCTCTGATTACAAC 114079 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || || ||||| ||||| Sbjct 114080 ATTCAGAAAGAATCTACTTTGCA 114102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||||||||| ||||||||||| || || | || || ||| Sbjct 114128 ATGCAGATTTTCGTCAAAACTTTGACAGGCAAAACTATCACTTTGGAGGTAGAAGCTTCA 114187 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || || ||| || ||||| ||| | || |||||| Sbjct 114188 GATACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 114247 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| |||||| || || || ||||||| ||| || | || || || Sbjct 114248 CAGAGATTGATTTTTGCGGGCAAGCAACTCGAGGACGGACGCACATTGTCAGATTATAAT 114307 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| || || || || || || Sbjct 114308 ATTCAGAAAGAATCCACATTACA 114330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398824341592999