Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1237 367 1e-95 seq9469 127 2e-23 seq3941 127 2e-23 seq4096 93.3 3e-13 >seq1237 Length=369427 Score = 367 bits (406), Expect = 1e-95 Identities = 761/1115 (68%), Gaps = 22/1115 (2%) Strand=Plus/Plus Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 ||||| ||||||| ||||| | |||||| || ||||||||||| || || ||||| | Sbjct 282745 ATTAAACTTACCATTCGCATCGATATCAAAAGTAACTTCAATTTGTGGTACACCTCTAGG 282804 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 || ||||| || || || | ||| | || ||| |||| ||||| || || | Sbjct 282805 TGCCGGTGGTATTCCAGTTAATTCGAATTTACCAAGAATATTGTTATCCTTGGTCATCGC 282864 Query 281554 TCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA 281613 || || || ||| | | ||||| | ||| | | ||||||||| ||||| || ||||| Sbjct 282865 TCTCTCCCCTTCGTAGACTTGGACAAGTACTCCTGGTTGATTATCGGAATATGTAGTAAA 282924 Query 281614 TACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 281672 | ||||| ||| | | || || ||||| || || | || | | | ||||| | || Sbjct 282925 TG-TCTGGGTTTGCTTCGTTGGTATCGTTGTATTCCTCTTGATCAAAGTTGTCATGACAC 282983 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 281732 | ||||| ||||| | || | || | |||||| || || | ||| | | || ||||| Sbjct 282984 CGCCAGCGGTTTCAATGCCCAATGACAAAGGAGTCACGTCTAGTAGAAGTAGATCTTGAA 283043 Query 281733 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 281792 || ||| | | |||| | |||||| || |||| || || ||||| ||||| | Sbjct 283044 CTTCCTCAGACTTGTCACCATGTAAAATAGCCGCCTGAACTGCTGCGCCATAAGCAACGG 283103 Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTT 281852 ||||||| ||||||| | || ||| || | |||||| ||||| |||| | ||| | || Sbjct 283104 CTTCATCCGGATTAATGGATTTATTCAGCTCTTTACCGTTGAAGAAATCTTGAAGTAATT 283163 Query 281853 GTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| | ||| || || | | || || || |||| || || || || || | Sbjct 283164 -TCTGAATCTTTGGTATCCTGGTGGAGCCACCGACTAGAACTATGCTGTGAACTTGAGCC 283222 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 || |||| || | ||| | |||| || || ||||||||| ||| |||| Sbjct 283223 TTGTCCATCTTCGCATCTCTAAGCGCTTTCTCGACAGGTTCAAGAGTGCTTCTGAACAGA 283282 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTT 282029 || | || |||||||||||| | ||||| || || ||| | || || || || |||| Sbjct 283283 TCGGCGCAGAGTTCTTCGAATCTGGCTCTGGT--GATTGATGTGTAGAAATCGATACCTT 283340 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | ||||| || |||| ||||| | | ||| ||||| ||| || || | || || | Sbjct 283341 CAAACAACGAGTCAATCTCAATGCTTGCTTGCGTCGACGAACTTAATGTCCTCTTCGCCC 283400 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT-TCAAATCTGTTTTA 282148 |||||| ||||| ||||| | || | ||| | || | || |||| || | || Sbjct 283401 TTTCACAGGCTGTTCTTAGACGTCTCACAGCTCTCT-TGTTAGAGCTCAAGTCCTTCTTG 283459 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 || ||||||||||| |||| || | |||| | ||||| || || || ||||| Sbjct 283460 TACTTTCTCTTGAATTCTTGCACGAAGTGGTTTACCATTCGATTGTCGAAGTCCTCACCA 283519 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268 || | | || | || | ||||| | |||| | ||| | ||||| || | | || | Sbjct 283520 CCGAGATGCGTGTCGCCAGCCGTAGATTTTACCTCGAAGATACCATCCTCGATTGTCAGA 283579 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 282328 | | || ||| ||| ||||| |||| ||||| || || || ||| |||| | || Sbjct 283580 ATTGACACGTCAAAGGTACCACCGCCCAAGTCAAAGATCAGGACGTTCTTTTC---GCCT 283636 Query 282329 TGG---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 | || ||||| ||||||||||| | ||||| ||||| |||||||| || || || Sbjct 283637 GCGGCTTTCTTATCGAGACCATACGCTATCGCAGCTGCAGTCGGTTCATTTATTATCCTA 283696 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | |||||| ||||||||||| || |||||||| || || || ||||| |||||||| Sbjct 283697 AGAACATTTAGACCAGCAATAGCACCAGCATCTTTCGTCGCCTGCCTTTGAGAATCGTTG 283756 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTT-- 282502 ||||| || || |||||||||||||| | || || |||| |||| ||| ||||| Sbjct 283757 AAATAAGCTGGCACAGTAATAACGGCGTTCGTCACGGTCTTGCCCAA-ATA--CGCTTCC 283813 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 ||||||| ||||| || ||| || ||| || || Sbjct 283814 GCTGTTTCCTTCATCTTCGTTAGAACCATGGAGGA 283848 >seq9469 Length=914958 Score = 127 bits (140), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 637114 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170 ||||||| | ||||| |||| ||| ||| || ||||| |||||||||||| | ||| Sbjct 732309 AAGAAAAGAGTAATTGTGGATTTTTCCAGTCCCAACATTGCCAAAGAAATGCATGTGGGA 732250 Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230 || |||||||| ||||| ||||| || ||||| ||| |||||||| | ||||| Sbjct 732249 CACTTAAGATCTACTATAATTGGAGACAGTATTTCAAGGCTATTAGAATATTTAGGACAT 732190 Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 637290 ||||| | | | |||||| | ||||| ||||| || || |||||||||||||| || Sbjct 732189 GATGTATTAAGACTCAATCATATAGGTGACTGGGGTACGCAGTTCGGTATGTTAATAGCA 732130 Query 637291 TATATTAAAAATAA 637304 || || || |||| Sbjct 732129 CATCTTCAAGATAA 732116 >seq3941 Length=2671896 Score = 127 bits (140), Expect = 2e-23 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | ||| || | ||||| |||| ||||||||||||||||||||||| | Sbjct 1986272 TTTATCTTCTTGTTTGTCCATGCCATATGCAAGTGCAGCAGCAGTTGGTTCATTAATTAC 1986331 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 || | ||||| | ||||| || || ||||| || || ||||||| ||||||||| Sbjct 1986332 TCGAAGCACATTCAATCCAGCTATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATC 1986391 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCGC 282500 || |||||||| || ||||||||||| |||| | ||||| | | ||| ||||| Sbjct 1986392 ATTGAAATATGCTGGCACAGTAATAACAGCATTTTTTACTGGAGTATTCAA-GTAAGCTG 1986450 Query 282501 TTGCTGTTTGTTTCATTTT 282519 ||||||| ||||||||| Sbjct 1986451 CAGCTGTTTCTTTCATTTT 1986469 Score = 107 bits (118), Expect = 1e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || |||||||| || || ||||||||||||||||||| | ||| |||| || || || Sbjct 1986294 CCATATGCAAGTGCAGCAGCAGTTGGTTCATTAATTACTCGAAGCACATTCAATCCAGCT 1986353 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| |||| ||||| ||||||||||| |||||| Sbjct 1986354 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCATTGAAATATGCTGGCACAGTA 1986413 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 1986414 ATAACAGCATTTTT 1986427 >seq4096 Length=474101 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 || ||||| || | ||| ||||||| |||||||| |||||||| ||| | || |||||| Sbjct 218338 GGAAAAGAGGGCAGAATTCGAGGAAACTTGATGGGCAAGCGTGTGGATTTTTCCGCACGT 218279 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTC-TCAATGAAGTTGGTGTTCCTCTCATTAT 432406 || || || || | ||||| || |||| | || | ||||||| || || | || ||| Sbjct 218278 ACCGTCATCACACCCGATCCCAAC-TTGCGCATCGACCAAGTTGGCGTGCCGCGCAGTAT 218220 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAAC 432439 ||| ||||| | || || |||||||||||| Sbjct 218219 AGCGCAAAATTTGACGTTCCCCGAAATTGTAAC 218187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740100607502766