Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6884 114 1e-20 seq7770 89.7 5e-13 >seq6884 Length=256371 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||||| ||||| |||||||| ||||| ||||| || ||| ||||||||| || Sbjct 114331 ATGTAATGTGGATTCTTTCTGAATATTATAATCTGACAATGTGCGTCCGTCCTCGAGTTG 114272 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||||||| |||| | | |||||| || ||||| ||||| || ||||| ||| || Sbjct 114271 CTTGCCCGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCCTCTTTGTCT-TGAATTT 114213 Query 133577 TTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || |||| | ||| | || || | | || || || | |||| |||||||| | Sbjct 114212 TCGCCTTGACATTCTCGATTGTATCTGAAGCTTCTACCTCCAAAGTGATAGTTTTGCCTG 114153 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||| |||||||||||||| Sbjct 114152 TCAAAGTTTTGACGAAAATCTGCAT 114128 Score = 104 bits (114), Expect = 2e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||||| || ||||| ||||| || ||||| ||| | ||| | | | || ||||| Sbjct 112965 AAATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA-TCTTCGAG 112907 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || | | |||||| || |||||||| ||||||||||| ||| Sbjct 112906 CTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGAGGGATACCTTCCTTGTCC-TGAA 112848 Query 133574 CTTTTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| || | ||| | ||||| | | ||||| || | |||| ||| || | Sbjct 112847 TTTTAGCTTTGACGTTCTCGATTGTGTCTGATGCTTCCACTTCCAATGTGATGGTCTTAC 112788 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || |||||||||||||| Sbjct 112787 CGGTGAGAGTCTTGACGAAAATCTGCAT 112760 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||||| || || ||||||||| | |||| ||| | || || || Sbjct 112509 AAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCA-TCTTCAAG 112451 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || | | ||||| || || ||||| |||||||| || || Sbjct 112450 CTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGGATACCTTCCTTATCCTGAAT 112391 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| |||| | ||||| || || | | |||||| || | |||| ||| || || Sbjct 112390 CTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCTTTCC 112331 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| || || |||||||| Sbjct 112330 TGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || || || |||||||||||| | |||| |||||| ||| Sbjct 112737 AAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAGAGCGTGCGTCCGTCCTCCAGC 112678 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | | ||| || || ||||| || || || ||||| ||| Sbjct 112677 TGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGAATTCCCTCTTTGTCTTGGATT 112618 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||||| ||| || | | ||| || || | || | || || || Sbjct 112617 TTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAAAGTAATAGTCTTTCCT 112558 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||||||||| Sbjct 112557 GTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || || |||||||| || |||||||| | ||| |||| || || | Sbjct 114105 AAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAGA--GTGTACGACCATCTTCAA 114048 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || | | |||||| || |||||||||||||||||||| ||| Sbjct 114047 GCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC-CTGA 113989 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||| |||| | || | |||||| | | || || || | |||| ||||| Sbjct 113988 ATTTTTGCTTTGACATTTTCTATCGTGTCTGATGCTTCAACTTCTAATGTGATAGTTTTA 113929 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || ||||| ||||| Sbjct 113928 CCAGTGAGAGTCTTGACAAAAATTTGCAT 113900 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||||| || || || ||||||||||| | || ||| ||| ||| Sbjct 113649 AAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGT--ACGTCCGTCTTCGG 113592 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || | || | | |||||| || |||||||||||||| || || ||| Sbjct 113591 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTATCC-TGA 113533 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 |||||||| | | | ||| | ||| || | | || || || | |||| ||||| Sbjct 113532 ATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGATTGTTTTA 113473 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || ||||||||||| Sbjct 113472 CCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || || || ||||||||||| || ||| ||| ||||| Sbjct 113193 AAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGGCCGTCTTCGAGT 113134 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || |||| | | ||| || || ||||| |||||||| || || ||| Sbjct 113133 TGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGAATGCCTTCTTTATC-TTGAAT 113075 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | ||| | ||| || | | || || || | |||| ||||| || Sbjct 113074 TTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGATTGTTTTACC 113015 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || ||||||||||| Sbjct 113014 GGTAAGAGTCTTGACAAAAATCTGCAT 112988 >seq7770 Length=449423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || || ||||||| || ||||| |||||||| || ||||||||| Sbjct 86950 TCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCCTTG 87009 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| |||||| || | | ||| | || || | | || || || | || | Sbjct 87010 TCTTGGAT-TTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCGACTTCAAGAGTAAT 87068 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || |||||||| || ||||||||||| Sbjct 87069 GGTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCAT 87104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483355592576840