Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7770 125 2e-23 seq6884 107 5e-18 >seq7770 Length=449423 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| |||||||||| | ||| Sbjct 88229 AAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTCTGACACAATAGAAAAC 88170 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || |||||||||||| ||||| || | | || || Sbjct 88169 GTGAAAGCCAAA-ATCCAGGACAAAGAAGGAATTCCTCCGGATCAGCAGCGTTTGATTTT 88111 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || | |||||||| |||||| | | ||||| ||| |||||||||| || Sbjct 88110 TGCTGGCAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATAACATCCAGAAAGAATC 88051 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||| ||| || | |||||| Sbjct 88050 CACTCTTCACCTGGTTCTGCGTCTTCGA 88023 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| ||||| || ||| | ||||| ||| ||| ||| Sbjct 88469 CAGATCTTTGTGAAGACTCTTACAGGCAAAACTATTACTCTTGAAGTAGAAGCTTCAGAC 88410 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| ||| ||||| || |||||||||||| ||||| || Sbjct 88409 ACCATAGAAAATGTGAAAGCCAAA-ATTCAGGACAAAGAAGGAATTCCCCCGGATCAGCA 88351 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || || ||||| ||| | |||||||| |||||| | | ||||| ||| | Sbjct 88350 GCGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGTAGGACTCTTTCTGATTATAACAT 88291 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| ||||| |||||| | ||| || | |||||| Sbjct 88290 CCAGAAAGAATCTACACTTCACTTAGTTCTGCGTCTTCGA 88251 Score = 120 bits (132), Expect = 7e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| ||||| || || | ||||| ||| |||||||||| | ||| Sbjct 88001 AAGACACTCACAGGCAAAACTATTACACTTGAAGTCGAAGCTTCTGACACAATAGAAAAC 87942 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || |||||||||||| ||||| || | | || || Sbjct 87941 GTGAAAGCCAAA-ATCCAGGACAAAGAAGGAATTCCTCCGGATCAGCAGCGTTTGATTTT 87883 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || | |||||||| |||||| | | ||||| ||| |||||||||| || Sbjct 87882 TGCTGGAAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATAACATCCAGAAAGAATC 87823 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| |||||| | ||| || | |||||| Sbjct 87822 TACACTTCACTTAGTTCTGCGTCTTCGA 87795 Score = 107 bits (118), Expect = 5e-18 Identities = 153/210 (73%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || |||||||| |||||| | ||||| ||| ||| || || | || Sbjct 87317 AAAACGCTTACTGGAAAAACTATCACTCTTGAAGTAGAAGCTTCAGATACTATAGAGAAT 87258 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| || ||||||||| |||||||| ||| || || |||| || || || Sbjct 87257 GTCAAAGCTAA-GATTCAAGACAAAGAAGGCATTCCTCCTGA---TCAACAGCGTTTAAT 87202 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || ||||| || |||||||||| || ||| | | || || || |||||||||| Sbjct 87201 TTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTATAATATCCAGAAAGA 87142 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||| | ||||| Sbjct 87141 ATCTACACTTCATCTGGTCTTGCGTCTTCG 87112 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| || ||||| ||||| |||||||||| ||||||||||| | ||| Sbjct 88480 CGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTT 88539 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||||||||| || ||||| || ||||| || || || ||| Sbjct 88540 CTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGA 88584 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || || ||||| ||||| |||||||||| ||||||||||| | ||| Sbjct 87112 CGAAGACGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTT 87171 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||||||||| || ||||| || || || | || |||||| Sbjct 87172 CTACCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGA 87216 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| |||||| | |||||| ||||| || || || | ||||||||||| | ||| Sbjct 86884 CGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGAAAGAGTT 86943 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||||| ||||| || || || || || || ||||| ||| Sbjct 86944 CTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGA 86988 >seq6884 Length=256371 Score = 107 bits (118), Expect = 5e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | |||||||| || ||||| ||||||||||| || || Sbjct 112307 CAGATCTTTGTCAAAACTTTGACAGGAAAGACCATCACGTTGGAAGTGGAGGCATCAGAT 112366 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| ||||||||| || || ||||| || ||||| || Sbjct 112367 ACAATTGAGAATGTCAAAGC-AAAGATTCAGGATAAGGAAGGTATCCCACCGGATCAGCA 112425 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | ||||| || ||||| ||| | |||||||| | || | ||||||||||| | Sbjct 112426 AAGATTAATCTTTGCTGGAAAACAGCTTGAAGATGGTCGCACGCTTTCCGATTACAACAT 112485 Query 206352 CCAGAAAGAGTCTACT 206367 || |||||||| ||| Sbjct 112486 TCAAAAAGAGTCCACT 112501 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | |||||||| || || ||||||||||| || |||||| Sbjct 112535 CAGATTTTTGTCAAAACCTTGACAGGAAAGACTATTACTTTGGAAGTAGAGGCTTCTGAT 112594 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| ||||| |||||| || || || Sbjct 112595 ACGATTGAGAATGTTAAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCTGATCAACAG 112654 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || ||||| || |||||| |||| || ||| | || | |||||||||| | Sbjct 112655 AGATTGATTTTCGCTGGCAAGCAGCTGGAGGACGGACGCACGCTCTCCGATTACAATATT 112714 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || ||||| || | ||||| ||||||| Sbjct 112715 CAAAAGGAATCCACTCTGCATTTAGTTTTACGACTTCG 112752 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||||||||||| || ||| Sbjct 112763 CAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTGGAAGCATCAGAC 112822 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| | | ||||| ||| ||||| || || ||||| || || || || Sbjct 112823 ACAATCGAGAACGTCAAAGCTAAA-ATTCAGGACAAGGAAGGTATCCCTCCAGATCAGCA 112881 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | ||||| || ||||| ||| | |||||||| | || | |||| |||||| | Sbjct 112882 GAGATTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGCACACTCTCCGACTACAACAT 112941 Query 206352 CCAGAAAGAGTCTACT 206367 ||||| ||||| ||| Sbjct 112942 TCAGAAGGAGTCGACT 112957 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | ||||| ||||| ||||||||||| || ||| ||| || Sbjct 114131 CAGATTTTCGTCAAAACTTTGACAGGCAAAACTATCACTTTGGAGGTAGAAGCTTCAGAT 114190 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| || |||||||| ||||| || ||| || || || Sbjct 114191 ACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAGCAG 114250 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || || ||||| | || || ||| | || ||| | ||||| || | Sbjct 114251 AGATTGATTTTTGCGGGCAAGCAACTCGAGGACGGACGCACATTGTCAGATTATAATATT 114310 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || || | || ||||| | ||||| || Sbjct 114311 CAGAAAGAATCCACATTACATCTTGTACTTCGACTTAGA 114349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181657401825511