Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4527 134 2e-26 seq9256 102 1e-16 seq8255 95.1 2e-14 >seq4527 Length=1270594 Score = 134 bits (148), Expect = 2e-26 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || |||||||| || | |||| | || ||||||| || || || || || || || Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || ||||||| | |||||||||||| |||||| || || || || |||||| Sbjct 575403 TATCTTTCAGACAAATAATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAATA 575462 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || | || || | |||||||||||| ||||||| |||||| | || ||| |||||| Sbjct 575463 CCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTTC 575522 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 |||| || | | || || || ||||| |||| ||| || || |||||||| || Sbjct 575523 AACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATCA 575582 Query 70210 TAAATAATAACAGAATTTAGTTTATCC 70236 ||||| || |||||| |||||| ||| Sbjct 575583 TAAATTATGGCAGAATCTAGTTTTTCC 575609 Score = 109 bits (120), Expect = 8e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 |||||||||||||| |||| | |||||| || |||||||| || || ||||| || Sbjct 573982 ATATGTTTCATAAGTGCCTTTTTCGGCAGCTAATTTGCAACTTGCTTCCAAGGCACCATA 574041 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| ||||||||||| || ||||||| |||| ||| ||| || ||||||||||| Sbjct 574042 ATAAAGAGTTTCGAAAATTTTGATATTGAGTTCTTTTGCCTCTTTGCTCTCGAATGGATA 574101 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | | | ||| ||||| || || || || | || ||||| | || | ||| | Sbjct 574102 TCGCATTAATAAAAAGGCATCCGCTAAACCTTGTATTCCGATACCTAAAGATATAT-ACA 574160 Query 69135 CTTATTTGAACTTTCAGCT 69153 ||| ||| || ||| |||| Sbjct 574161 CTT-TTTAAATTTTTAGCT 574178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 ||||||| || |||||||| |||||||||||| |||| |||||| |||||| ||||| Sbjct 574723 TATATAGTTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGAC 574782 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 ||||||| ||| |||| || | || |||| |||||| ||||| || ||||| | Sbjct 574783 ACATCAAGCTCCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATA 574842 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 || | ||| | ||||| | || | | | ||| ||||||| Sbjct 574843 GACCATAAAATAAGTCTCTAGCTCGCATGTTTCCATCTCCTGTA 574886 Score = 96.9 bits (106), Expect = 5e-15 Identities = 236/355 (66%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| |||||||||||| | | ||| || ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||| |||| ||||| | ||| || || ||||| | | || ||||| || Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACTTTTGCAATTGTTTTAAGTTTATCAA 574337 Query 69236 AATCAAA----TCGTCCATC-TAT-AACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||| || | || || ||| |||||||||||| | ||| | |||||| ||||||| Sbjct 574338 AATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGATTAC 574397 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || || || || | | ||||| || | || || || | || || |||| Sbjct 574398 ATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTGCATT 574457 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 |||| || || | | || |||||| |||| || || || || ||||| ||| Sbjct 574458 TGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGCATAT 574517 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGC 69464 | ||||| ||||| || | || ||| || ||| | ||| || ||||||| Sbjct 574518 AAGGAGTTCCAGTCTCTACTTGCGATCTGAGAATGGCAACCCATACAGCCCTAGC 574572 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 || |||||||| || || ||||| | ||||| |||||||| | ||||| || || || Sbjct 573670 TAGATATTACTCGTGTACGGTTCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGAC 573729 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || |||||||||||||| | ||| | |||||| | || ||| | |||||| ||| Sbjct 573730 GCCGTTGGCATAGGTGCAATCAAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCT 573789 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 || | | | ||||||||| | || | ||| ||||||||| | || ||||| || Sbjct 573790 TTCAATTTATCCCAATCCCATAAATTTGTCGGTTTAACATTCCACATGTCATATTGGAGG 573849 Query 68929 AT 68930 || Sbjct 573850 AT 573851 >seq9256 Length=299688 Score = 102 bits (112), Expect = 1e-16 Identities = 128/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 68950 CCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCA 69009 || ||||||| | |||| | |||| || ||||| ||||||||| || ||||| ||| Sbjct 296541 CCTTTATATGATACATATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCA 296600 Query 69010 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAAT 69069 || ||||| | || || ||||| | ||||||| | | |||||| | || || ||| Sbjct 296601 CCATAATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAAT 296660 Query 69070 GGATAATGTAA--AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 ||||| | | | |||| ||||||||||||| ||||| || || |||||||| Sbjct 296661 GGATA-TCTCATTAAGA-TAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 >seq8255 Length=582279 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 39421 ttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 ||||| |||||||||| | | ||||||||| ||||| ||||| ||||| | ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 39481 CATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTC 39540 | | ||||||||||||||| | || ||||||| || | || | ||| || | ||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 39541 GATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAA 39597 || ||||| || || |||| || ||| | || || | ||| | ||| || | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCAC-ACGT--TCAAAGGATGGTTTTTGTAC 398688 Query 39598 TAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||||||||||| || || || || ||||||| |||| Sbjct 398687 AATGTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 398644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||||||||| |||||||| || ||| | || ||||||||||| | ||| |||||| | Sbjct 397725 TACTTCTTCTATGGTCCAAAAGGATGCCACAGCTTTTTTGTACATATCCCAAATATCAGG 397666 Query 40174 ATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTCCA 40229 |||||| || || ||||| ||||| | ||||||| || ||||| ||||||| Sbjct 397665 ATATTGAATGGGGAAAATCACAAAACGATTTGGACCTTCCTGAAGGAGTGGTTCCA 397610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816144589240