Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10315 113 4e-20 seq8255 96.9 3e-15 >seq10315 Length=458173 Score = 113 bits (124), Expect = 4e-20 Identities = 201/291 (69%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || || ||| ||||| || || || | |||||||||| || || || Sbjct 443929 ATTGGTGGTTTAGATAAGGAGTTCAGTGCCATTTTCAGAAGAGCATTTGCATCTCGCGTC 443870 Query 19303 TTTTCTGCAGA---TGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTT 19359 ||| | | || ||||| | |||||||| || |||||||| ||| |||| || Sbjct 443869 TTTCCAACGGAGATTGTCACT---CAATTGGGTTGCAAACATGTAAAAGGAATTTTACTG 443813 Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACT---TAGTAAATTACTT 19416 ||||||||||| ||| |||||||||||||| || || || | | || ||| | Sbjct 443812 TATGGGCCACCTGGTACAGGAAAAACATTAATGGCTCGACAAATAGGAACTATGTTAAAT 443753 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | || || || ||||||||||| || |||| || |||||||||| || || Sbjct 443752 GCAAGAGAA---CCAAAGATTGTAAATGGCCCACAAATTTTGGATAAATATGTTGGAGAA 443696 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 |||| || | || | ||||||||||| || ||||| ||| ||||| Sbjct 443695 AGTGAAGCTAACATCAGAAGATTGTTTGCTGATGCAGAAGAGGAAGAAAAA 443645 >seq8255 Length=582279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| | | ||||| ||| || ||||| || |||||||| || || || || ||| Sbjct 397877 GAAAGATACTTTATCTCTCATGTCTTGGCATTCTTTGCTGCTTCTGATGGAATCGTTAAT 397936 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| || || | || |||||||| || | | |||||||| ||||| ||| Sbjct 397937 GAGAATCTGATTGAGAGATTCAGTCAAGAAGTAAAAATTGCTGAAGCACGTTGTTTCTAT 397996 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || || |||||||||||||| || |||||||| |||||||| Sbjct 397997 GGATTCCAAATTGCCATAGAGAACATTCATTCTGAAATGTA 398037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397403728449955