Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7770 122 6e-23 seq6884 116 3e-21 >seq7770 Length=449423 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || || || ||| ||| ||| | || |||||| | Sbjct 87561 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87502 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| ||||| |||||||||||| |||| || || Sbjct 87501 TGACACAATAGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 87442 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACA 27967 ||||| ||||||||||| |||||||||||||| |||| ||| | |||| || ||||| | Sbjct 87441 ACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTT-TCGGATTATA 87383 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || ||||| ||| | ||| ||||| ||||| | || || || Sbjct 87382 ACATTCAGAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGTGG 87334 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || || || ||| ||| ||| | || |||||| | Sbjct 87789 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87730 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| ||||| |||||||||||| |||| || || Sbjct 87729 TGACACAATAGAAAACGTAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATCA 87670 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACA 27967 ||||| ||||||||||| |||||||||||||| |||| ||| | |||| || ||||| | Sbjct 87669 ACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTT-TCGGATTATA 87611 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || ||||| ||| | ||||| ||| ||||| | || || || Sbjct 87610 ACATTCAGAAAGAATCCACACTTCATTTAGTTCTGCGTCTTCGAGGAGG 87562 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| || || || || ||| ||||||| |||| |||||| | Sbjct 88017 AATGCAAATTTTTGTGAAGACACTCACAGGCAAAACTATTACACTTGAAGTCGAAGCTTC 87958 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| ||||| ||||||||||| |||| ||| || Sbjct 87957 TGACACAATAGAAAACGTGAAAGCCAAAATCCAGGACAAAGAAGGAATTCCTCCGGATCA 87898 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || |||||||| ||||||||| | || || | | | | || ||||| || Sbjct 87897 GCAGCGTTTGATTTTTGCTGGAAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATAA 87838 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || | || || ||| ||||| | || || || Sbjct 87837 CATCCAGAAAGAATCTACACTTCACTTAGTTCTGCGTCTTCGAGGAGG 87790 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||||||||| |||||||| ||| ||| || |||| || ||| | Sbjct 87333 AATGCAAATCTTTGTGAAAACGCTTACTGGAAAAACTATCACTCTTGAAGTAGAAGCTTC 87274 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| |||||| || || ||||||||||| |||| || Sbjct 87273 AGATACTATAGAGAAT--GTCAAAGCTAAGATTCAAGACAAAGAAGGCATTCCTCCTGAT 87216 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || ||||||||||| ||||||||| |||| || | | | | || || || Sbjct 87215 CAACAGCGTTTAATTTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTAT 87156 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| ||||| || | ||| |||| |||||| | ||||| || Sbjct 87155 AATATCCAGAAAGAATCTACACTTCATCTGGTCTTGCGTCTTCGTGGAGG 87106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| || || || ||| ||| ||| | || |||||| | Sbjct 88245 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 88186 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| ||||| ||||||||||| |||| ||| || Sbjct 88185 TGACACAATAGAAAACGTGAAAGCCAAAATCCAGGACAAAGAAGGAATTCCTCCGGATCA 88126 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || |||||||| || |||||| | || || | | | | || ||||| || Sbjct 88125 GCAGCGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATAA 88066 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| |||| | || ||||| ||||| | || || || Sbjct 88065 CATCCAGAAAGAATCCACTCTTCACCTGGTTCTGCGTCTTCGAGGAGG 88018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| ||| || || |||| || ||| || Sbjct 88700 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACCATCACCCTTGAGGTAGAAGCTTCC 88641 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | |||||| || ||| || |||||||| |||| || ||| Sbjct 88640 GACACTATAGAGAATGTCAAAGCCAAGATACAAGATAAAGAAGGCATTCCTCCTGATCAG 88581 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || | || ||||| ||||||||| |||| || | | | | || || || || Sbjct 88580 CAGCGTCTGATCTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTATAAT 88521 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| || | ||| ||||||||||| | ||||| || Sbjct 88520 ATCCAGAAAGAATCTACACTTCATCTGGTTTTGCGTCTTCGTGGAGG 88474 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || |||||||| |||||||| || ||| |||||| |||| || ||| | Sbjct 88473 AATGCAGATCTTTGTGAAGACTCTTACAGGCAAAACTATTACTCTTGAAGTAGAAGCTTC 88414 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| ||||| ||||||||||| |||| ||| || Sbjct 88413 AGACACCATAGAAAATGTGAAAGCCAAAATTCAGGACAAAGAAGGAATTCCCCCGGATCA 88354 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || |||||||| |||||||| | || || | | | | || ||||| || Sbjct 88353 GCAGCGTTTGATTTTTGCTGGAAAACAGCTTGAAGATGGTAGGACTCTTTCTGATTATAA 88294 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || | || || ||| ||||| | || || || Sbjct 88293 CATCCAGAAAGAATCTACACTTCACTTAGTTCTGCGTCTTCGAGGAGG 88246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| |||||||||||||||||||| || ||| ||||| |||| |||||| | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| |||||| ||||| ||||| |||| || Sbjct 87045 AGATACCATAGAGAAT--GTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGAT 86988 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGAT 27963 |||||||| | |||||||| || ||||| | || || | |||| || | || || Sbjct 86987 CAGCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATG---GCAGAACTCTTTCTGAC 86931 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGA 28019 || || || ||||| || || | || || |||||||| | ||||| ||||| Sbjct 86930 TATAATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGTGGAGGCGA 86875 >seq6884 Length=256371 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| |||||||| || |||||||| || ||| || ||| | || |||||| | || Sbjct 112988 ATGCAGATTTTTGTCAAGACTCTTACCGGTAAAACAATCACATTGGAAGTCGAAGCATCA 113047 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| || ||| ||||| || |||||||| |||| ||| | Sbjct 113048 GATACGATAGAGAAT--GTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCGGATC 113105 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | ||||||||||| ||||||||| | || |||| |||| ||||| ||||||| Sbjct 113106 AACAGAGATTAATTTTTGCTGGAAAACAACTCGAAGACGGCCGCACTTTGTCAGATTACA 113165 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 | || ||||| || |||| ||||||| ||||| || Sbjct 113166 ATATTCAAAAGGAATCCACTCTGCATTTAGTTTTACG 113202 Score = 107 bits (118), Expect = 1e-18 Identities = 117/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||| || || || |||||| | || ||| |||||| | ||||| ||| Sbjct 112379 GTCAAAGCAAAGATTCAGGATAAGGAAGGTATCCCACCGGATCAGCAAAGATTAATCTTT 112438 Query 27925 GCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACAACATCCAAAAAGAGAG 27983 || |||||||| | || || | |||| |||| |||||||||||||| ||||||||| Sbjct 112439 GCTGGAAAACAGCTTGAAGATGGTCGCACGCTT-TCCGATTACAACATTCAAAAAGAGTC 112497 Query 27984 CACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||||| | ||| | ||||| || Sbjct 112498 CACTTTGCATTTGGTTCTTCGTCTACGTGGTGG 112530 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || | ||||| ||| || || | || || ||| | | Sbjct 112076 ATGCAGATTTTTGTGAAGACGTTAACTGGAAAAACCATAACTCTCGAAGTTGAAGCCTCT 112135 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || |||| || || ||| || |||||||| ||| |||| | Sbjct 112136 GAC-----ACCATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCACCTG 112190 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || |||||||| ||||||||| | || |||| ||| | |||||| |||| Sbjct 112191 ACCAGCAGCGTTTGATTTTTGCTGGAAAACAACTTGAAGACGGACGTACCTTGTCTGATT 112250 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| || |||| | |||||||| | | ||||||||||| Sbjct 112251 ATAATATCCAAAAGGAATCCACTCTTCATTTGGTCCTCAGATTGCGTGGCGG 112302 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| || ||||| ||||| ||| ||| ||| | || || ||| | || Sbjct 113900 ATGCAAATTTTTGTCAAGACTCTCACTGGTAAAACTATCACATTAGAAGTTGAAGCATCA 113959 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||||| | ||| |||||| |||||| ||||| ||||| | || ||| | Sbjct 113960 GACACGATAGAAAAT--GTCAAAGCAAAAATTCAGGACAAGGAAGGCATCCCTCCGGATC 114017 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || ||||| |||||||| | || || | || | | || ||||||| Sbjct 114018 AGCAGAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGTCGTACACTCTCTGATTACA 114077 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || ||||| ||||||||||| || Sbjct 114078 ACATTCAGAAAGAATCTACTTTGCATTTAGT 114108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355815598645257