Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6884 100 2e-16 seq7770 91.5 1e-13 >seq6884 Length=256371 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| | ||| ||||||||| || || ||||||| ||| || || | || ||| Sbjct 112512 ACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCATCTTCA 112453 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || | | ||||| | ||||||| | | || || ||| | Sbjct 112452 AGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG-ATACCTTCCTTATCC-T 112395 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || ||||| || | | ||||| | |||||| |||| |||||| | | Sbjct 112394 GAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCT 112335 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| ||||| |||||||| ||||| Sbjct 112334 TTCCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 |||||||| || ||| || ||||| ||||||||||| | |||| || ||| |||| || Sbjct 112284 ACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGACAAG-GTACGTCCGTCTTC 112226 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||| ||||| || ||||| || | |||||||||||| | || | | |||||||||| Sbjct 112225 AAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCC 112168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | || | ||||| ||| ||||| || ||||||||||| | Sbjct 114354 CCGCCTCTAAGTCGAAGTACAAGATGTAATGTGGATTCTTTCTGAATATTATAATCTGAC 114295 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| ||| |||| || || || ||||||||||| || | | |||||| || | || Sbjct 114294 AATGTGCGTCCGTCCTCGAGTTGCTTGCCCGCAAAAATCAATCTCTGCTGATCAGGAGGA 114235 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||||||||| |||||| |||| || | | ||||| | || || Sbjct 114234 ATGCCCTCTTTGTCTTGAATTTTCGCCTTGACATTCTCGATTGTATCTGAAGCTTCTACC 114175 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||||| |||| || |||| ||||| || || || ||||| Sbjct 114174 TCCAAAGTGATAGTTTTGCCTGTCAAAGTTTTGACGAAAATCTGCAT 114128 >seq7770 Length=449423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| ||| || || ||||| || |||||||| || | ||| |||| | Sbjct 87118 CGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTTCTACCA 87177 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || ||||| || ||||| || | |||||| || || | || | || |||||| Sbjct 87178 TCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGAATGCCTTCTTTG 87237 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||||| || | | ||||| | || || || | |||||| Sbjct 87238 TCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTACTTCAAGAGTGATA 87297 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || |||||||| |||||||||||||| Sbjct 87298 GTTTTTCCAGTAAGCGTTTTCACAAAGATTTGCAT 87332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||| ||| || || ||||| || |||||||| || | ||| |||| | Sbjct 88486 CGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTTCTACCA 88545 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || ||||| || ||||| || ||||||||||| || | || | || ||||| Sbjct 88546 TCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCTTTA 88605 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||||| || | | || ||| | || || || | ||||| Sbjct 88606 TCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTACCTCAAGGGTGATG 88665 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || ||||| |||||||||||||| Sbjct 88666 GTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCAT 88700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429489108176183