Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4527 163 4e-35 seq9256 120 4e-22 seq8255 111 2e-19 >seq4527 Length=1270594 Score = 163 bits (180), Expect = 4e-35 Identities = 198/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || |||||||| || | | ||| | || ||||||| || || || ||||| ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || ||||||| || || |||||||||||| |||||| || ||||| | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || ||||| | |||||||||||| ||||||||||| || |||| ||| ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 |||||| || | | || | || |||||||||| ||| || || |||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 78617 GTAAATAATAACAGAATTTAGTTTATC 78643 ||||| || |||||| |||||| || Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTC 575608 Score = 113 bits (124), Expect = 6e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 |||||||||||||| |||| | |||||| || ||||| |||||||| || || || Sbjct 573982 ATATGTTTCATAAGTGCCTTTTTCGGCAGCTAATTTGCAACTTGCTTCCAAGGCACCATA 574041 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| ||||||||||| || ||||||| |||| ||| || | || || || ||||| Sbjct 574042 ATAAAGAGTTTCGAAAATTTTGATATTGAGTTCTTTTGCCTCTTTGCTCTCGAATGGATA 574101 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | | ||||||||| ||||| || || | ||| ||||| | || | ||| | Sbjct 574102 TCGCATTAATAAAAAGGCATCCGCTAAACCTTGTATTCCGATACCTAAAGATATAT-ACA 574160 Query 77543 CTTATTGGAAATTTTAGCT 77561 ||| || || |||||||| Sbjct 574161 CTT-TTTAAATTTTTAGCT 574178 Score = 111 bits (122), Expect = 2e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 77914 TATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGC 77973 ||||||| || ||||||||| |||||||||||| |||| ||||| |||||| ||| | Sbjct 574723 TATATAGTTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGAC 574782 Query 77974 ACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATA 78033 ||||||| ||| | ||| | | || |||| |||||||||||| |||||||||| Sbjct 574783 ACATCAAGCTCCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATA 574842 Query 78034 GAGCAATAAATAGATCTCGGGTTC-TATGTTCTTCATTTCCTGTA 78077 || || ||||| |||| | || ||||| | ||| ||||||| Sbjct 574843 GACCATAAAATAAGTCTCTAGCTCGCATGTT-TCCATCTCCTGTA 574886 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 77170 ||||||||| || || |||||||| |||||||| | | || |||||||| || Sbjct 573624 ATGAGGATTGACGATGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGT 573683 Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || ||||| | ||||| || ||||| || ||||| || || || || ||||||||||| Sbjct 573684 GTACGGTTCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGG 573743 Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 77290 ||| | ||| | |||||| | || ||| | |||||| ||||| | | | ||| Sbjct 573744 TGCAATCAAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCA 573803 Query 77291 ATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 |||||| | || || ||| ||||| ||| | || ||||| || || Sbjct 573804 ATCCCATAAATTTGTCGGTTTAACATTCCACATGTCATATTGGAGGAT 573851 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 76848 CTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATA 76907 ||||| || |||||||||| ||| ||||| | | ||||| |||| |||| | Sbjct 573281 CTCCAACCAAAGAAATGCATCGATGTAAGTTTCTCAGTCGTCGGATCCCCTATGTGAACA 573340 Query 76908 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 76967 |||| || || ||||||||| |||||||| | |||||||||||||| | ||| Sbjct 573341 TTCAAAGATTGCGATTGATCGATAAAAGCTCCACGATCAGCCGCCATTTCGAGAATTACT 573400 Query 76968 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 || || || || ||||| | ||||||| ||| ||| | |||||| |||| Sbjct 573401 TTCTGCGGTATCTCCCATACAGTTTTGTAAAGCACTTTCAGATCATCAGGAA 573452 Score = 89.7 bits (98), Expect = 7e-13 Identities = 228/339 (67%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||||||| | | ||| || |||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 77584 TGTCTATAATTTTATTGAGATT---TCTAACAACTACTTTAACCACGTCCTTT-AGTTTA 77639 || |||| ||||| | ||| | | |||||| ||| || | ||| |||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTT--GCAATTGTTTTAAGTTTA 574333 Query 77640 AGAAAATC-AAATCTTCCATCT-----ATAACAAACATGTTCAAAGCTATAGATGCTAGA 77693 |||||| ||| || | | |||||||||| || | || |||||||| ||| Sbjct 574334 TCAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGA 574393 Query 77694 TTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTA 77753 ||||| || || || || || | ||||| || | || || || | || || Sbjct 574394 TTACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTG 574453 Query 77754 CATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAG 77812 |||||||| || || | | || || || |||| ||||| |||| || |||||||| Sbjct 574454 CATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGA-TCTTTATAAAG 574512 Query 77813 AATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||| | ||||| || || || | || ||| || ||| Sbjct 574513 CATATAAGGAGTTCCAGTCTCTACTTGCGATCTGAGAAT 574551 >seq9256 Length=299688 Score = 120 bits (132), Expect = 4e-22 Identities = 195/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 78368 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGC 78427 || ||| || |||| |||||| || |||||| | |||| || ||||||| | | | Sbjct 297887 AAAAAATCACCTAGCCATTTGTTGTGTAACAGTACATGCAGTATCTAATGTCTGTGCAGG 297946 Query 78428 ATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCA 78487 || |||| ||| || ||||| | ||||||||||||||||||| || || || Sbjct 297947 ATATATAAAATATTGTTTTGAAAGAAAATTGTATGTTTCAATAGCTTTATCAATATCATC 298006 Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547 | |||||| ||| || || ||||||| |||||| || ||||||||||| ||| Sbjct 298007 ATCATGAATAGCTATAGCAACTCGCATCAGCATATGTTGTGGTCTTTCAACAACCTTTCC 298066 Query 78548 ATTTATTTTCAACAAGTATGATT--TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 78605 ||| | || || ||| ||||| ||||||| ||||| | | ||| | || | Sbjct 298067 ATTCAACTTTAATAAG--TGATTAGTTTCCAACATTTTATATGTAGTATAACTATAATTA 298124 Query 78606 AAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || ||||| || || || || ||||||||| ||||||| Sbjct 298125 AAATCTCTGTCATATATTATTGCAGAATTTAATTTATCT 298163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 77358 CCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 || ||||||| | |||| | |||| | ||||| ||||||||| ||||| || || Sbjct 296541 CCTTTATATGATACATATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCA 296600 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 || ||||| | || || ||||| | ||||||| | | ||||| || ||||| Sbjct 296601 CCATAATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAAT 296660 Query 77478 GGATAATGTAA--AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 ||||| | | | |||| |||| |||||||||||||| || || |||||||| Sbjct 296661 GGATA-TCTCATTAAGA-TAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 >seq8255 Length=582279 Score = 111 bits (122), Expect = 2e-19 Identities = 157/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 47945 TTTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCAT 48004 ||||| |||||||||| | | || |||||| ||||||||||| || || || ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 48005 CATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTC 48064 | | ||||||||||||||| | || ||||||| || | || | ||| || ||||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 48065 GATAGTGACAGCATCCACTATTATCGATGTTAC-CGTTTCCTCACTTGGTGGATACA--A 48121 || |||||||||| ||| || ||| | || |||| || | ||| | | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCACACGTT----CAAAGGATGGTTTTTGTA 398689 Query 48122 CAAA-TGTTTAAACATTAAACATGCAAAATCACAATG 48157 ||| |||||||||||||||||||||||||| ||||| Sbjct 398688 CAATGTGTTTAAACATTAAACATGCAAAATCGCAATG 398652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694575097862240