Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4527 143 4e-29 seq8255 136 6e-27 seq9256 95.1 2e-14 >seq4527 Length=1270594 Score = 143 bits (158), Expect = 4e-29 Identities = 194/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || |||||||| || | | ||| | || ||||| | || || || ||||| || || Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 77033 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || ||||||| || || |||||||||||| ||| || || || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || ||||| || | |||||||||||| ||||||| |||||| |||| ||| ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 |||||| || | | || | || |||||||||| ||| || || |||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 77212 GTAAATAATAACCGAATTTAGTTTGTCC 77239 ||||| || | |||| |||||| ||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCC 575609 Score = 111 bits (122), Expect = 2e-19 Identities = 192/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 75655 ATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 75714 ||||| || || || | ||| || ||| | ||||| ||| | | ||||||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 || || |||||||| |||||||| | || || |||||||| || || ||||| Sbjct 573633 GACGATGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGTTC 573692 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 | ||||| || ||||| || ||||| || || || || || ||||||||||| | ||| Sbjct 573693 GATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATCAA 573752 Query 75835 TAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAG 75894 | |||||| | || ||| | |||||| ||||| | | | ||||||||| | Sbjct 573753 AAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCATAA 573812 Query 75895 ATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 || || ||| ||||| ||| | || ||||| || || Sbjct 573813 ATTTGTCGGTTTAACATTCCACATGTCATATTGGAGGAT 573851 Score = 105 bits (116), Expect = 1e-17 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 || ||||||||| |||||||||||| |||| |||||| |||||| ||||||||||| Sbjct 574733 TTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGACACATCAAGCT 574792 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | ||| | | || |||| |||||||||||| |||||||||||| || ||| Sbjct 574793 CCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATAGACCATAAAA 574852 Query 76639 TAGATCTCGGGTTC-TACGTTCTTCATTTCCTGTA 76672 || |||| | || | ||| | ||| ||||||| Sbjct 574853 TAAGTCTCTAGCTCGCATGTT-TCCATCTCCTGTA 574886 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 75443 CTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA 75502 ||||| || |||||||||| ||| ||||| | ||||||| |||| |||| | Sbjct 573281 CTCCAACCAAAGAAATGCATCGATGTAAGTTTCTCAGTCGTCGGATCCCCTATGTGAACA 573340 Query 75503 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 75562 |||| || || ||||||||| |||||||| | |||||||||||||| | ||| Sbjct 573341 TTCAAAGATTGCGATTGATCGATAAAAGCTCCACGATCAGCCGCCATTTCGAGAATTACT 573400 Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 || || || || ||||| | ||||||| ||| ||| | |||||| |||| Sbjct 573401 TTCTGCGGTATCTCCCATACAGTTTTGTAAAGCACTTTCAGATCATCAGGAA 573452 Score = 95.1 bits (104), Expect = 2e-14 Identities = 229/339 (68%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||||||||||||| | | ||| || ||| | |||| ||| || ||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 76179 TATCTATAATTTTATTGAGATT---TCTGACAACTACTTTAACCACGTCCTTT-AGTTTG 76234 ||| |||| ||||| | ||| | |||||||| ||| || | ||| ||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTT--GCAATTGTTTTAAGTTTA 574333 Query 76235 AGAAAATC-AAATTTTCCATCT-----ATCACAAACATATTAAGAGCTATAGATGCTAGA 76288 |||||| ||| ||| | | | ||||||||||| | || |||||||| ||| Sbjct 574334 TCAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGA 574393 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 ||||| || || || || || | | ||||| || | || ||||| | || || Sbjct 574394 TTACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTG 574453 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAG 76407 || ||||| || |||| | || || || |||| || | |||| || |||||||| Sbjct 574454 CATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGA-TCTTTATAAAG 574512 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 | | | ||||||||||| || | || ||| || ||| Sbjct 574513 CATATAAGGAGTTCCAGTCTCTACTTGCGATCTGAGAAT 574551 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||||||||| ||||| || | | |||||| || |||||| || || || ||||| || Sbjct 573982 ATATGTTTCATAAGTGCCTTTTTCGGCAGCTAATTTGCAACTTGCTTCCAAGGCACCATA 574041 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||| ||||||||||| || |||| || |||| || || || || || ||||| Sbjct 574042 ATAAAGAGTTTCGAAAATTTTGATATTGAGTTCTTTTGCCTCTTTGCTCTCGAATGGATA 574101 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 | | | | ||| ||||| |||| || || | ||| ||||| | || | ||| Sbjct 574102 TCGCATTAATAAAAAGGCATCCGCTAAACCTTGTATTCCGATACCTAAAGATATAT 574157 >seq8255 Length=582279 Score = 136 bits (150), Expect = 6e-27 Identities = 167/224 (75%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 46896 AACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATC 46953 || |||||| || || | || || ||||||||| ||||||||||| || || || || Sbjct 398062 AATATATGTTTCAATAAGCAAGGA--ATACATTTCAGAATGAATGTTCTCTATGGCAATT 398005 Query 46954 TGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGAC 47013 || ||||| || ||||| | |||||||| ||| | ||| ||| || |||| ||| | Sbjct 398004 TGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATC 397945 Query 47014 AAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAA 47073 | ||||||||| || ||||||||| ||||||||| |||||||| ||||| ||||| Sbjct 397944 AGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAG 397885 Query 47074 TATTTTTCATCGGTAGTCAG--TTTATT-CCAGTCATTGATATC 47114 ||| |||| || | | | || ||| || |||||| || |||| Sbjct 397884 TATCTTTCGTCAGAATTAAGCTTTTCTTCCCAGTCTTTTTTATC 397841 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46434 TTTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCAT 46493 ||||| |||||||||| | | || |||||| ||||||||||| || || | ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 46494 CATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTC 46553 | | ||||||||||||||| | || ||| |||| || | || | ||| || ||||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 46554 AATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAA 46613 ||| ||||||||| ||| || ||| | || ||| |||| || | | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCACACGTTCAAAGGATGGTTTTTGTACAAT 398685 Query 46614 ATGTTTAAACATTAAACATGCAAAATCACAATG 46646 |||||||||||||||||||||||||| ||||| Sbjct 398684 GTGTTTAAACATTAAACATGCAAAATCGCAATG 398652 >seq9256 Length=299688 Score = 95.1 bits (104), Expect = 2e-14 Identities = 189/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 || ||| || |||| |||||| || |||||| | |||| || ||||| | | | Sbjct 297887 AAAAAATCACCTAGCCATTTGTTGTGTAACAGTACATGCAGTATCTAATGTCTGTGCAGG 297946 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCA 77082 || | || ||| || ||||| | |||||||||||||||| || || ||||| Sbjct 297947 ATATATAAAATATTGTTTTGAAAGAAAATTGTATGTTTCAATAGCTTTATCAATATCATC 298006 Query 77083 TTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATT 77142 | |||||| ||| ||| || ||||||| |||||| || |||| ||| ||| ||| Sbjct 298007 ATCATGAATAGCTATAGCAACTCGCATCAGCATATGTTGTGGTCTTTCAACAACCTTTCC 298066 Query 77143 ATTTATTTTCAACAAGTATGATT--TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 77200 ||| | || || ||| ||||| ||||||| ||||| | | ||| | || | Sbjct 298067 ATTCAACTTTAATAAG--TGATTAGTTTCCAACATTTTATATGTAGTATAACTATAATTA 298124 Query 77201 AAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 || ||||| || || || || | ||||||| ||| || Sbjct 298125 AAATCTCTGTCATATATTATTGCAGAATTTAATTTATC 298162 Score = 91.5 bits (100), Expect = 2e-13 Identities = 230/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGA-AATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 ||||||||| ||||||| ||| | || ||||| | ||| |||| ||| ||| ||||| Sbjct 296775 TACCAATAGATCTATGTTTCTCACAAGACAATTTTAT-TTCCGGAAGAGGATAAAAATTA 296833 Query 76178 ATATCTATAATTTTATTGAGATTTC---TGACAACTACTTTAACCACGTCCTTTAGTTTG 76234 ||| || ||||||| | ||| |||||| | || || | || || || || Sbjct 296834 GCATCAATCATTTTATCCAAATTGTAAGTGACAATT---TTCACAATTTCTTTAAGCTTA 296890 Query 76235 AGAAAATCAAA--TTTTCCATCTA---TC-ACAAACATATTAAGAGCTATAGATGCTAGA 76288 ||| ||||| ||||| || || ||||||||||| | ||| || || ||| | Sbjct 296891 TTAAAGTCAAAAGTTTTCTTAATAGGATCTACAAACATATTGACAGCAATTGAAGCTGTA 296950 Query 76289 TTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTA 76348 ||||| | |||| || | | | | | ||| || || ||||| ||| | | | ||| Sbjct 296951 TTACACATAGCTATTTCGTCGGAACTTGAATACTGAATGATCTCAGTGGAGAAACCACTG 297010 Query 76349 CACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTAC-ATGAGTCCTTATAAAG 76407 || || || || || | |||||| || || | ||| | |||| |||| || ||||||| Sbjct 297011 CATTTAATTGTGCCCAAATTTTGATGATTTGTTTTTCTATTACAATGA-TCTTTATAAAC 297069 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 | | | || || || ||||||| |||| || || ||| Sbjct 297070 TATATATGGTGTGCCTGTTTCAAATTGTGTTTGAATGATA 297109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 75953 CCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCA 76012 || ||||||| | | || | || | ||| ||||| ||| ||||| || ||||| ||| Sbjct 296541 CCTTTATATGATACATATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCA 296600 Query 76013 CCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAA 76072 || ||||| | || || ||||| | |||| || | | ||||| | || ||||| Sbjct 296601 CCATAATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAAT 296660 Query 76073 GGATAATGTAA--AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 ||||| | | | |||| ||||||||||||||| ||| || || |||||||| Sbjct 296661 GGATA-TCTCATTAAGA-TAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712838234061120