Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6884 107 2e-18 >seq6884 Length=256371 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||||||||| ||||| | || |||||||| || || || || Sbjct 112951 CTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCAAA 112892 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG- 41789 |||| | ||| || || | || | | ||||||||| ||| |||| |||| ||| Sbjct 112891 GATCAATCTCTGCTGATCTGGAGGGATACCTTCCTTGTCC-TGAATTTTAGCTTTGACGT 112833 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| | ||||| |||| || || || ||||| || || ||||| | Sbjct 112832 TCTCGATTGTGTCTGATGCTTCCACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGA 112773 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 112772 CGAAAATCTGCAT 112760 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || ||||| || | |||||| ||| ||||| ||||| || || |||||| Sbjct 112758 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAG 112699 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||| ||||| |||| | |||||| || | ||| Sbjct 112698 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGA 112639 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||| ||||| |||||| ||| | | | || || | ||| || Sbjct 112638 ATTCCCTCTTTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACT 112579 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| || || || ||||||||||| Sbjct 112578 TCCAAAGTAATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462241640969200