Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2732095 219 4e-52 >seq2732095 Length=3591 Score = 219 bits (242), Expect = 4e-52 Identities = 524/787 (67%), Gaps = 9/787 (1%) Strand=Plus/Minus Query 15907 CATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATAT 15966 |||| ||||||| || | || | ||||| |||||||| ||||| ||||| | |||||| Sbjct 1775 CATT-TTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATAT 1717 Query 15967 ATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCC 16024 |||||||| || ||||| ||||| || || ||| |||| | || || ||| Sbjct 1716 GTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAG--CTTATCACAGCCTAGCTCC 1659 Query 16025 GTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCT 16084 || | | |||||| |||||||| || ||||| | ||| | | || || || || Sbjct 1658 ACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCA 1599 Query 16085 ATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTA 16144 || || || || ||||| | ||||| |||| |||||| || || || || | | Sbjct 1598 ATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCA 1539 Query 16145 ATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTT--AGGTGTTTAAACATTAGAC 16202 |||||| | | | || | ||| | || || | || || ||||| |||| Sbjct 1538 ATGATA--GACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACATGAGAC 1481 Query 16203 ACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACC 16262 | || ||||| || || ||||| || ||| ||| | ||| ||| ||| || | | Sbjct 1480 AGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGAC 1421 Query 16263 CTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATA 16322 | ||||| || |||||||| | ||| || ||||||||||| || || ||||| | Sbjct 1420 CAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAA 1361 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 |||| || |||| ||||| || || | ||||| || || ||||| || || || Sbjct 1360 TACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAA 1301 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442 ||||| || | |||| || || || | ||| | |||| || || || | ||| || | Sbjct 1300 TCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGA 1241 Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 ||| | | | || ||| | | || | || || || | || |||||||||||||||| Sbjct 1240 ACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTT 1181 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | ||| || || || || || || || || ||||| ||||||| || || | | || Sbjct 1180 CACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTT 1121 Query 16563 GTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 | ||||| | | |||| || | || || ||||| || || || ||| ||||| | Sbjct 1120 GAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGA 1061 Query 16623 AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTT 16682 |||| |||| | || |||||||| | | || ||| |||| ||| ||| || Sbjct 1060 AAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCCCAGTCAC 1001 Query 16683 TTAAATC 16689 |||||| Sbjct 1000 CTAAATC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493829978411840