Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2732095 269 3e-67 seq2683473 93.3 5e-14 seq2129313 93.3 5e-14 >seq2732095 Length=3591 Score = 269 bits (298), Expect = 3e-67 Identities = 534/788 (68%), Gaps = 7/788 (1%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||||||||| ||||||||| || || || | ||||| || || || |||||||| Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 || | ||||| ||||||||||| || ||||||| |||| || | | | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 || | || || | | |||||| ||||| || || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| || || || || || || ||||| |||| | |||||||||||||| ||| Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 24126 || || || ||||| || | || ||| || || ||| | |||| || | Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCA--AATGCTTGA 1490 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| | ||| || || || ||| ||||| || || || |||||||| ||| || Sbjct 1489 ACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAA 1430 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || || || ||||| |||||||| || || |||||||| || | ||||| || || Sbjct 1429 AGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGC 1370 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGT 24306 |||||||| ||||| || || ||||||||||| | | ||| |||||| || | | Sbjct 1369 TGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTT 1310 Query 24307 CATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 |||| ||||| | ||||||| || ||||||||||| |||||||||| ||||| | Sbjct 1309 CATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAA 1250 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 ||||| || || |||| ||| | | ||| | | || || | || | | || Sbjct 1249 CGGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAAC 1190 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 | |||||||| || || ||||| || || ||||| || || || || ||||| || | Sbjct 1189 TGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTT 1130 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | || || |||||| || |||| || | | ||||||||| || || || ||| Sbjct 1129 CTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAG 1070 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 || || ||||| |||| ||||| || |||| | | || || | ||||||| Sbjct 1069 AAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTAT 1010 Query 24604 TCCAATCA 24611 ||| ||| Sbjct 1009 CCCAGTCA 1002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||| | ||||||||||||||| ||||||||||| || | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 |||| || ||| | |||||||| ||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 >seq2683473 Length=2397 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 1602 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 1661 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || ||||| || || || ||| ||||||| |||||||| Sbjct 1662 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 1702 >seq2129313 Length=838 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 793 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 734 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || ||||| || || || ||| ||||||| |||||||| Sbjct 733 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573307135877760