Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2750648 102 7e-17 seq2732657 102 7e-17 >seq2750648 Length=12224 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 |||| ||||||||||||| | |||||| | || || || || ||||| ||| ||| Sbjct 10817 GTAATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAA 10876 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 | | |||||| | | | ||||| |||||||| || ||||||||| | || Sbjct 10877 TCGGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCC 10936 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||| || | || || || || |||||| | |||||| ||| ||| | ||| Sbjct 10937 GATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGAT 10996 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAggg 29189 || || ||||| || |||||||| |||| |||| || || | |||| ||| Sbjct 10997 TATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGGG 11050 >seq2732657 Length=3626 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||| || || || || |||||||| || ||||| |||||| Sbjct 2824 GATAAGGAAGGTATTCCTCCAGACCAGCAGAGGCTGATCTTTGCTGGTAAACAGCTGGAA 2765 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || || | || |||||||||||||||||||||||||||||| |||| || Sbjct 2764 GATGGCCGCACATTGTCAGACTACAATATTCAGAAGGAATCTACTCTTCACTTGGTACTA 2705 Query 29175 CGATTACGAGGAgg 29188 |||| |||| || Sbjct 2704 AGATTGAGAGGTGG 2691 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||| || ||||| || |||||||| || |||||||||||| Sbjct 3052 GATAAGGAAGGTATTCCCCCAGACCAGCAAAGGCTGATCTTTGCAGGTAAACAACTGGAA 2993 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | || || | || ||||| |||||||||||||||||||||||| | || | Sbjct 2992 GATGGCCGCACATTGTCTGACTACAACATTCAGAAGGAATCTACTCTTCACCTTGTACTC 2933 Query 29175 CGATTACGAGGAgg 29188 ||| | |||| || Sbjct 2932 CGACTTAGAGGTGG 2919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || | || || ||||| |||||| ||| ||| || || Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||| ||| || || |||||| | || ||| || Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 2342 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| ||||| || || |||||| ||| || | || |||||| Sbjct 2341 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAAT 2282 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||||||||| || || Sbjct 2281 ATTCAGAAGGAATCTACACTCCA 2259 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| ||| | || || || ||||| ||| || ||||| || Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || || ||||| |||||| | || ||| ||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||||||| || || | |||||||| Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAAC 3422 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 |||||||||||||||||||||||| | || | ||||| |||| || Sbjct 3421 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGAGGTGG 3375 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || ||||| |||||||| ||||| || ||||||||| || || | || Sbjct 1892 AGATCAGCAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGA 1833 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||| ||||||||||||||||| ||||| |||| Sbjct 1832 TTACAACATTCAGAAGGAATCTACCCTTCATTTGGT 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413976334364360