Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2732657 98.7 8e-16 >seq2732657 Length=3626 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || || |||| || | ||| || ||||| ||||| || ||||| | | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || ||||||||||| || ||| | || || ||||||||||| || Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 2810 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||| || | | | || ||| || || | Sbjct 2811 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACT 2870 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | ||||| |||||||| ||||| Sbjct 2871 TCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | ||||| || || || ||||| || || | || ||| | | || Sbjct 3162 AGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCT 3221 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| ||||| ||| |||| | ||||| ||||| || | ||||||||| || Sbjct 3222 TCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCC 3281 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | |||||| || || ||||| || |||||| Sbjct 3282 TGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTC 3341 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | ||||||||||| |||||||| Sbjct 3342 TTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || || |||| ||| | || || ||||| |||||||| || || | | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||||||| ||||| ||| | || ||||||||||| || || Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| ||| || | | | || ||| ||| || | Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACT 1958 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | || || || || || ||||| Sbjct 1959 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| |||||||| |||| ||| | || || ||||| ||||| || ||||| | | Sbjct 2007 CCGCCTCTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGAC 2066 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || |||| ||| || || ||| | || | |||||||||||| ||| Sbjct 2067 AAAGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 2126 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||| || | | | |||||| || || | Sbjct 2127 ATACCTTCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTACT 2186 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | || || || || || ||||| Sbjct 2187 TCCAATGTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||| || || | ||| | || || ||||| ||||| || ||||| | | Sbjct 2235 CCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGAC 2294 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || ||||| ||||| ||| | || || ||||||||||| || Sbjct 2295 AGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 2354 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | | || || |||||| | Sbjct 2355 ATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACT 2414 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||| || || || || | || || ||||| |||||||| Sbjct 2415 TCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408103254845792