Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2732095 168 7e-37 seq2605843 98.7 1e-15 seq2732657 89.7 5e-13 >seq2732095 Length=3591 Score = 168 bits (186), Expect = 7e-37 Identities = 330/481 (69%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 ||| | |||||||| || |||||||| |||||||| || || || || || || Sbjct 1027 GAGAGACATTTCATTTCCCATGTGCTGGCATTTTTCGCTGCTTCTGATGGGATTGTTAAT 1086 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 || ||||| |||||| | ||| || || || || || | || || | ||||| || Sbjct 1087 GAAAATCTTGTCGAGAGATTCTGCCAAGAAGTTCAAGTTCCAGAAGCAAGATGCTTTTAT 1146 Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACG 116914 || || || || || ||||| || | ||| |||||||| |||||| |||| Sbjct 1147 GGTTTCCAAATTGCAATGGAAAATATCCACAGTGAAATGTACAGTTTACTCATCAACACC 1206 Query 116915 TACGTGCG---CTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG 116971 ||| | | |||| | || | || | | |||| || ||| | ||||| |||| Sbjct 1207 TACATCAGAGACTCT--GAAGAACAAAATA-GACTGTTCAATGCCGTTGAGACCTTGCCT 1263 Query 116972 TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA-GAGAGGCCGCCTT 117030 || |||||| ||||||| || ||||| ||| | ||||| ||| || || | | || Sbjct 1264 TGTGTCAAAAAGAAGGCTGACTGGGCTCTGAGATGGATTGCC--CATGAAACTGCTAGTT 1321 Query 117031 CGGC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCG 117089 || || || | | ||||| || || || || || | ||||| || || | Sbjct 1322 ATGCTGAACGTATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTG 1381 Query 117090 CCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGC 117149 | || || ||||||||||||||||| ||||| ||||| || || || || ||||| || Sbjct 1382 CTGCGATCTTTTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAAT 1441 Query 117150 TCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGG 117209 | ||||||||||| || ||||| || |||||||||||| | ||||||||||||||| Sbjct 1442 TAATCTCCAGGGATGAAGGTCTTCACACTGACTTTGCCTGTCTCATGTTCAAGCATTTGG 1501 Query 117210 T 117210 | Sbjct 1502 T 1502 >seq2605843 Length=1800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || || | |||||||| ||||| ||| | |||||| | ||| | Sbjct 637 ATGCAAATATTCGTCAAGACCTTAACGGGCAAGACCATAACCTTAGACGTCAATTCCAAC 578 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | || || | |||||| |||| || | ||||||| | || | | || Sbjct 577 GACACTATTCAGACAGTGAAGGAATTTATTCAAGATAGAGAGGGCGTACCGCCCAATCAA 518 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | |||| ||||| ||||| ||||| || || |||||||| Sbjct 517 CAGAGACTAATATTTTCGGGGAAACAACTGGAAGACGACAAAACTCTTTTAGACTACAAT 458 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| || ||| |||| || || || |||||||| || || Sbjct 457 GTCCAGAAAGAAAGCACTTTGCACCTCGTTTTACGCTTGAGAGGGGG 411 >seq2732657 Length=3626 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || || |||||||| | || |||||| | | Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| ||| |||| || || || ||||| || | ||||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | || ||||| ||| |||| || | || ||| | || |||||| Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| || |||| || ||| | ||| | || ||||| || || Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGG 3147 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || ||||| ||||| || || ||||||||| | || || ||| | | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || || | || || || || || || | |||||| Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || ||||||||||| || | ||||| | |||||||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 40870 ATCCAGAAGGA 40880 || |||||||| Sbjct 2737 ATTCAGAAGGA 2727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || |||||||| | || || ||| | | Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | || || | || || || || || ||| | |||||| Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || |||| || || ||||| ||||| || | ||||| | ||||||||| Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| | || || || || || Sbjct 2965 ATTCAGAAGGAATCTACTCTTCACCTTGT 2937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497503954549120