Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2750648 136 6e-27 seq2732657 122 1e-22 seq1400646 87.8 3e-12 >seq2750648 Length=12224 Score = 136 bits (150), Expect = 6e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| ||||| || || || || || |||||||| | ||| | Sbjct 10822 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGG 10881 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| || | ||||| ||||| ||||| ||||||||||| || || ||||| Sbjct 10882 AGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCA 10941 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGA-ACATTAGAAGATTATA 124716 ||| | | ||||| || || ||||||||||| |||| | | |||| ||||||| Sbjct 10942 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTA-CTGATTATA 11000 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 | |||||||||||||| || | ||||||||||| Sbjct 11001 ACATTCAAAAAGAATCTACAATTCATTTGGTTTT 11034 >seq2732657 Length=3626 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| ||||| | ||| |||| || | Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCT 2630 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||||| || || |||||||| ||||| || || |||||||| Sbjct 2629 GATACTATTGAAAATGTTAAAACT-AAGATCCAAGATAAGGAAGGCATCCCTCCTGATCA 2571 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||| | |||||||| || || || | || ||| |||| ||||| ||||| || Sbjct 2570 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAA 2511 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| || || || || || | ||||| || | | | |||||||||| ||| || Sbjct 2510 TATCCAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGAGGTGGTATGCAAATTT 2452 >seq1400646 Length=492 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||||||||| |||| ||||| || || || || || | |||||| | ||||| Sbjct 165 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGG 106 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 | | ||| || | ||||| |||| ||||| |||| |||||| || || ||||| Sbjct 105 AAAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGATCA 46 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATA 124695 ||| | | ||||| || || ||||||||||| |||| Sbjct 45 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729480476441600