Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2442759 127 2e-24 seq2750648 105 6e-18 seq2732657 95.1 1e-14 seq2732095 93.3 4e-14 >seq2442759 Length=1285 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||| | ||||| || | |||||| || || || ||||||||||| Sbjct 85 TACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTG 144 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||| || ||||| |||||||| |||| | | |||||| ||||| | Sbjct 145 ACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTG 204 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||| ||| || ||| || || | ||||| |||||| | ||| | Sbjct 205 GAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTA 264 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | ||| | || || || || || || || ||||| ||||||||| Sbjct 265 CCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATG 314 >seq2750648 Length=12224 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 |||||| ||||| || |||||||| |||||||||||||| ||||| | ||| | Sbjct 11038 TCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATT 10979 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || | ||||| || ||| | || | ||||| ||||||||||| || || || || Sbjct 10978 ATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTT 10919 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCA 118701 |||| ||||||||||||| | ||| | || || | | | || || || | || | Sbjct 10918 GTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGAT-TCTACTTCTATAGTAA 10860 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| || || ||||| Sbjct 10859 TTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || | ||| | ||||| || | ||||| || || |||||||||||||| | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || ||| ||| || ||||| || || || |||| || | ||||||||| || || Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || ||| ||| || | ||| | ||||| | | || || Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACT 1958 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || || || || || || || |||||||| Sbjct 1959 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq2732095 Length=3591 Score = 93.3 bits (102), Expect = 4e-14 Identities = 393/618 (64%), Gaps = 37/618 (6%) Strand=Plus/Plus Query 44698 TATTCACACGGAAATGTACAATCTTCTCATACACGCTTTGATTAAAGACGAAAAGAAACA 44757 ||| |||| |||||||||| | | ||||| || | | || | |||| | |||| Sbjct 1170 TATCCACAGTGAAATGTACAGTTTACTCATCAACACCTACATCAGAGACTCTGAAGAACA 1229 Query 44758 AGAGATGCTTTTGAATGGTTTCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGC 44817 | | | || || |||| | |||| |||| || || | ||||| || ||||| Sbjct 1230 AAATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAAAAAGAAGGCTGACTGGGC 1289 Query 44818 GATGAAGTATATTGACGATGAAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCAT 44877 ||| | |||| | |||||| | || || ||||| | | || || || Sbjct 1290 TCTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACGTATCATTGCCTTTGCTGC 1349 Query 44878 TGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTTACATGAAAACCAAGGG 44937 ||| ||||| | ||||| || ||||| ||||| |||| | || | || Sbjct 1350 TGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTCAAGAAACGTGG 1409 Query 44938 AGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACAC 44997 ||||||| || || || |||||||| ||||| || || || || |||||||| ||||| Sbjct 1410 CCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAAGGTCTTCACAC 1469 Query 44998 CAACTTTGCCTGCCTCTACTATAATACGAGAGTCGATCAAA-AGTTGG---ACGCGCCCA 45053 |||||||||| ||| || | |||| | |||| || ||| | Sbjct 1470 TGACTTTGCCTGTCTC-------AT---------GTTCAAGCATTTGGTAAACAAGCCTA 1513 Query 45054 CCGTCAACGACATGTTC------TCC-----GAAGCCGTGGCCATCGAGATGGAATTTTT 45102 |||||| ||||||| || || ||||| || || ||||| || Sbjct 1514 --GTCAACAGCATGTTCAGTCTATCATTGATGATGCCGTCAAAATTGAACAAGAATTCTT 1571 Query 45103 TGCTGAGGCTCTGCCCG--AATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTAC 45160 |||| |||||||| | |||| | | || |||||| | | ||||| | ||| Sbjct 1572 AACTGATGCTCTGCCTGTCAATC--TCATTGGTATGAACTGTGTTCTTATGAGGCAATAC 1629 Query 45161 ATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCCAAGATGTACTATACT 45220 ||||| ||||| || ||||||||||| || || || | | ||| | ||| || | Sbjct 1630 ATTGAATTTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGCTTTACAATGCA 1689 Query 45221 GAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAG 45280 ||||| ||||| || || ||| | || || || | ||||| ||||| || || ||||| Sbjct 1690 GAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTTCTTTGAA 1749 Query 45281 AAACGCGTCGGCGAATAC 45298 || | || ||||| ||| Sbjct 1750 AAGAGAGTAGGCGAGTAC 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419286538436704