Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2750648 118 2e-21 seq2442759 89.7 7e-13 seq2732657 86.0 9e-12 >seq2750648 Length=12224 Score = 118 bits (130), Expect = 2e-21 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || |||||||| | ||||||||||| || |||||||| | | Sbjct 11049 CCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTA 10990 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | | | | |||| ||||||||||| || || ||||| |||| || ||||| |||||| Sbjct 10989 ATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGA 10930 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || ||| ||||||| Sbjct 10929 ATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACT 10870 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| ||||| || | |||||| | ||||||||||||| Sbjct 10869 TCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq2442759 Length=1285 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | |||||||| | |||||||| || || || |||||||| Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | || ||||||||||| ||||| || ||||| || || ||| Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 207 ATGCCCTCCTTATCTTG 223 >seq2732657 Length=3626 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||||| | ||| | || | ||||||||| || || || || || || Sbjct 2919 CCACCTCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAC 2978 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | |||||| || ||||| |||| |||||||| || || ||| Sbjct 2979 AATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 3038 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 3039 ATACCTTCCTTATCTTG 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717961062615040