Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2732095 275 6e-69 >seq2732095 Length=3591 Score = 275 bits (304), Expect = 6e-69 Identities = 545/799 (68%), Gaps = 6/799 (1%) Strand=Plus/Minus Query 15927 TTGACATAACTG-ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 ||||||||||| |||||||| | || || | ||||||||||||||||| || ||||| Sbjct 1789 TTGACATAACTCCACATTTTTGG-TACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTA 1731 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG 16045 || || | || || |||||||| || ||||| ||||| | || | || ||||| Sbjct 1730 CCCTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCA 1671 Query 16046 CATCCCAATTCCAACAATAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 || || | |||| ||| || | ||| || |||||||| || || || |||| | | | Sbjct 1670 CAGCCTAGCTCCA-CAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAAC 1612 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 ||||||||| || || | || ||||| | || || ||||| || | || ||| || || Sbjct 1611 ACAGTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTT 1552 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACTATTTAAC-GGAGGGTTTAATAAGTGTT 16223 || || ||| || ||| || | | || || | || ||||| || || | Sbjct 1551 GACGGCATCATCAATGATAGA-CTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCT 1493 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 | ||||| | ||| ||||| ||| || | ||||| ||||| ||||| || || Sbjct 1492 TGAACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGC 1433 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAAC 16343 ||| |||||||| ||||| || || ||||| || | |||||| || || ||||| |||| Sbjct 1432 TAAAGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAAC 1373 Query 16344 CAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAt 16403 | ||||| |||||||| || || ||||| |||| | || ||| | || | | Sbjct 1372 CGCTGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAG 1313 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 ||| | | |||||| | |||||| | || || | ||| ||||| || | ||| Sbjct 1312 TTTCATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCT 1253 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | | ||||| || | ||||| ||||| ||| || || || | || |||| Sbjct 1252 CAACGGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTA 1193 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAG 16583 |||| |||||||| || ||||| |||||||| || || ||||||||||||||||| | Sbjct 1192 AACTGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTG 1133 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 |||| | | ||| ||||| | | || || || | | ||||| ||||| || |||| Sbjct 1132 CTTCTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCAT 1073 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 | ||| || ||||| || || | || ||| |||| | | || | ||| ||||| Sbjct 1072 CAGAAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTT 1013 Query 16704 TTAACCAGTCAGAAAAATC 16722 | ||||||| ||||| Sbjct 1012 TATCCCAGTCACCTAAATC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446609033643200