Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2732095 279 5e-70 >seq2732095 Length=3591 Score = 279 bits (308), Expect = 5e-70 Identities = 560/821 (68%), Gaps = 16/821 (2%) Strand=Plus/Minus Query 13888 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTT 13947 |||| || | || ||||| || |||||| || || | ||||| |||||||||||||| Sbjct 1797 GTCTGTGCTTGACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTT 1738 Query 13948 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACAC 14007 |||||||| || || ||||| |||||||| || ||||||||||| || | | | Sbjct 1737 GGTTTTACCCTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAG 1678 Query 14008 TTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACAT 14067 |||||||| ||||| || | || | | ||| |||| || ||||| ||||| ||| Sbjct 1677 CTTATCACAGCCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCAT 1618 Query 14068 TAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTC 14127 | | |||| |||||||| || || || ||||| | || ||||| ||||||| ||| Sbjct 1617 AAGAACACAGTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTC 1558 Query 14128 TATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAG 14187 || || || || | || ||| | || | | | | || ||| | |||| Sbjct 1557 AATTTTGACGGCATCATCAATGATAGACTGAACA--TGCTGTTGACT-AGGCTTGTTTAC 1501 Query 14188 ---ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244 ||| || || || | ||| ||||| ||| ||||| || ||||| || || | Sbjct 1500 CAAATGCTTGAACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAA 1441 Query 14245 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304 ||| || ||| || | || ||||||| || ||||| || | |||||| || ||||| Sbjct 1440 TTCATTGCTAAAGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGC 1381 Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA-A 14363 || || ||| ||||| || || || || |||||||| || || | ||||| || | Sbjct 1380 AAAGGAACCGCTGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATA 1321 Query 14364 ACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14423 || | || ||| | | |||||| | |||||| |||| || ||||| | | || Sbjct 1320 ACTA-GCAGTTTCATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAG 1262 Query 14424 CCATTGTTTCAATAGCATTAAATAA---ATGTTCCTTCTCTTTAGTACTTGAAATGTATG 14480 || || |||| ||||| || | || || |||| ||| ||| |||| | Sbjct 1261 GCAAGGTCTCAACGGCATTGAACAGTCTATTTTG-TTCTTCAGAGTCTCTGA--TGTAGG 1205 Query 14481 TATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14540 | | || ||||| || ||||||||| ||| || |||||||| || || || ||||||| Sbjct 1204 TGTTGATGAGTAAACTGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCAT 1145 Query 14541 AAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCAT 14600 |||| ||||| ||||||| ||| || ||| | | ||||| ||| | | |||||||| Sbjct 1144 AAAAGCATCTTGCTTCTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCAT 1085 Query 14601 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660 |||| || |||||| ||| || |||||||||| | | ||| || | | ||| | Sbjct 1084 TAACAATCCCATCAGAAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCT 1025 Query 14661 CATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGA 14701 ||| | ||||| | ||| || ||||||||| |||||| Sbjct 1024 CATCCTTAAGTTTATCCCAGTCACCTAAATCCT--GAAAGA 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465760677124160