Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2732657 102 6e-17 seq2750648 84.2 2e-11 >seq2732657 Length=3626 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 || ||| |||| |||||||| |||||||| || |||||||| || | || || || Sbjct 3158 TCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACC 3217 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||||||| || ||||| ||| | || | || ||||| || || | ||||||||| Sbjct 3218 ATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTT 3277 Query 18230 ATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 ||| ||| | | ||| || | ||| || ||| || ||| ||| | ||||| Sbjct 3278 ATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGAT 3337 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | || || || | ||||| |||||||||||||| Sbjct 3338 GGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| ||||||| |||||| || ||||| || ||||| |||||||| | || ||| | Sbjct 2702 TCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCC 2761 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 |||||||| ||||| || ||| |||| || || || || || || | |||||||| Sbjct 2762 ATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTT 2821 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 ||| || | | || ||||| | | ||| |||||| || || ||| | ||||| Sbjct 2822 ATCTTGGATCT-TAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGA 2880 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || || | ||||| ||||| || ||||| Sbjct 2881 TGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | |||||| || ||||| || |||||||||||||| | || ||| Sbjct 2928 AGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGG 2987 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||| |||||| || ||| |||| || ||||| || || ||| | |||||| Sbjct 2988 CCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCC 3047 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| || | | || ||||| | | ||| || || || || |||| || Sbjct 3048 TTATCTTGGATCT-TAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGT 3106 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| | || || || | ||||| ||||| || ||||| Sbjct 3107 GATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||||| || ||||| || ||||||||||| || | | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| || ||||| ||| |||| ||||| || ||||| || Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || || | |||| || || | | ||| |||||| ||| || Sbjct 1899 ATGCCCTCCTTGTCCTGGATCT-TTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAAC 1957 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || || | || || || || || ||||| Sbjct 1958 TTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq2750648 Length=12224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTA-GTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTC 18154 ||||| ||| || |||| | |||| |||| ||| ||||||||||||||||| || || Sbjct 11053 TATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATC 10994 Query 18155 GGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCAC 18214 | || |||| |||||| |||||||| || || | || | || |||||||| Sbjct 10993 AGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGG 10934 Query 18215 GGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTC 18274 || | ||||| || || |||| ||| || | | | | | || || || | || Sbjct 10933 AGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTC 10874 Query 18275 GGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 ||| || || || | || || || | ||||||||| || ||||||||| ||| Sbjct 10873 TACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTATTA 10818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 366626756992440