Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2732095 206 2e-48 seq2750648 113 4e-20 seq2732657 111 1e-19 seq2442759 98.7 9e-16 >seq2732095 Length=3591 Score = 206 bits (228), Expect = 2e-48 Identities = 506/764 (66%), Gaps = 10/764 (1%) Strand=Plus/Plus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| |||| ||| || ||| |||| |||||||| || || ||||| |||||||| Sbjct 1027 GAGAGACATTTCATTTCCCATGTGCTGGCATTTTTCGCTGCTTCTGATGGGATTGTTAAT 1086 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 || ||| | ||||| ||||| | |||||||| ||||| | || || ||||||||||| Sbjct 1087 GAAAATCTTGTCGAGAGATTCTGCCAAGAAGTTCAAGTTCCAGAAGCAAGATGCTTTTAT 1146 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || ||| | || || ||||| | || |||||||| |||||||| | || Sbjct 1147 GGTTTCCAAATTGCAATGGAAAATATCCACAGTGAAATGTACAGTTTACTCATCAACACC 1206 Query 57849 TACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCG 57908 ||| | | ||| || || || |||||||||||| || | || || |||| Sbjct 1207 TACATCAGAGACTCTGAAGAACAAAATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGT 1266 Query 57909 ATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCC 57968 || |||||||| || ||| | | | |||||| | || || | | || Sbjct 1267 GTCAAAAAGAAGGCTGACTGGGCTCTGAGATGGATTGCCCATGAAACTGCTAGTTATGCT 1326 Query 57969 GAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCA 58028 || | | || || || || || || |||||||| ||||| || |||||| || Sbjct 1327 GAACGTATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCG 1386 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || |||||| | |||||||| ||||||||||| || || || |||||||| || || || Sbjct 1387 ATCTTTTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATC 1446 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAAT 58148 || | || || ||||| || ||||| ||||| || || |||| | || | || || Sbjct 1447 TCCAGGGATGAAGGTCTTCACACTGACTTTGCCTGTCTCATGTTCAAGCATTTGGTAAAC 1506 Query 58149 AAACCGACGCGGGATCGCATCTT--GGACATTATCACCGAGGCGGTCGCGATCGAAAATG 58206 || || | | | |||| || | || || || || ||| || ||| | | Sbjct 1507 AAGCCTAGTC--AACAGCATGTTCAGTCTATCATTGATGATGCCGTCAAAATTGAACAAG 1564 Query 58207 AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC---GGTATGAACAATGATTTGATGT 58263 | || | || || || || || || || ||| ||||||||| || | | ||| Sbjct 1565 AATTCTTAACTGATGCTCTGCCTGT---CAATCTCATTGGTATGAACTGTGTTCTTATGA 1621 Query 58264 CAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATT 58323 | |||||||| |||||||| || | ||| | | || || | || | || Sbjct 1622 GGCAATACATTGAATTTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGCTTT 1681 Query 58324 ACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACT 58383 |||| | | ||||| ||||| || ||| | || || || ||||| || || |||| Sbjct 1682 ACAATGCAGAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACT 1741 Query 58384 TTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | || ||||| | ||| |||| || ||||||| || || ||| Sbjct 1742 TCTTTGAAAAGAGAGTAGGCGAGTACCAAAAATGTGGAGTTATG 1785 >seq2750648 Length=12224 Score = 113 bits (124), Expect = 4e-20 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||| || || || || || || || || | || || ||| || Sbjct 10823 ATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGGA 10882 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| | |||| ||||| ||||| | || ||||| || Sbjct 10883 GAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCAA 10942 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| ||||| || ||||| || ||||| || ||| | ||||||||| Sbjct 10943 CAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAAC 11002 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGGGGCGGTAGAA 31424 |||||||||||||| || ||||| |||| | ||||| |||||| | || || Sbjct 11003 ATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGGGATACAA 11056 >seq2732657 Length=3626 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || ||||| || || ||||| | || || ||||| || Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| ||||||||| | || || ||||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCA-GGATAAGGAAGGCATTCCACCAGACCA 3255 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || |||||||| ||||||||||| | || || ||||| || Sbjct 3254 ACAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAA 3195 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || |||||||| || |||||| |||| ||| || |||| || |||| Sbjct 3194 CATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGGTA 3145 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || || ||| | || || ||||| || Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | || || |||||||| | || || ||||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || ||||||||||| | || || ||||| ||| Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAAC 3422 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| |||||||| || ||||| || |||| || |||| Sbjct 3421 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGAGGTGGTA 3373 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| | || || ||||| || Sbjct 2233 ATGCAGATCTTCGTGAAGACACTTACTGGAAAGACCATCACATTGGAAGTAGAACCATCT 2174 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| |||||| | || || |||||||| | || || |||||| Sbjct 2173 GATACCATTGAAAATGTCAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 2114 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || ||||||||||| | ||| || || || || Sbjct 2113 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTTTGTCTGACTACAAT 2054 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| |||| || || || || ||||||| Sbjct 2053 ATTCAGAAGGAATCTACACTCCATTTGGTTCTCAGGCTTAGAGGCGGTA 2005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || ||||| ||||| || ||| | || || || || || Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | | |||||||||| | || || ||||| Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAG-ACAAGGAAGGTATCCCTCCAGACCA 2343 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | ||||| | ||| || || || || Sbjct 2342 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAA 2283 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| | || ||||| || || || |||| Sbjct 2282 TATTCAGAAGGAATCTACACTCCATTTAGTTCTTAGGCTTAGAGGTGGTA 2233 >seq2442759 Length=1285 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| || || || || || || ||| | || || || || Sbjct 316 AACATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCT 257 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||||| || || || ||| | || ||||| ||| | || ||||| Sbjct 256 TCAGACACCATCGAAAATGTAAAGGCAAAGA-TCCAAGATAAGGAGGGCATTCCACCCGA 198 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | | || || ||||| || ||| ||||||| || || ||||| Sbjct 197 CCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTA 138 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || |||||| |||| |||||| | || || |||| Sbjct 137 CAACATCCAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGAGGTGGTA 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430825485084296