Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2732095 163 5e-35 seq2738736 89.7 1e-12 >seq2732095 Length=3591 Score = 163 bits (180), Expect = 5e-35 Identities = 309/452 (68%), Gaps = 7/452 (2%) Strand=Plus/Plus Query 101906 GCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCA 101965 || |||| || ||||||||||||| || ||||| || ||||| || ||| | || || Sbjct 1324 GCTGAACGTATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCT 1383 Query 101966 TCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTC 102025 | || || ||| ||||||| | || | |||||||||| |||| |||||| || Sbjct 1384 GCGATCTTTTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTA 1443 Query 102026 ATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTT 102085 || || ||||| ||||||||||| |||||||| || | |||| || | ||| Sbjct 1444 ATCTCCAGGGATGAAGGTCTTCACACTGACTTTGCCTGTCTCATGTTCAAGCA---TTTG 1500 Query 102086 GTTGATACCCCA--TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTG 102143 || | | || |||| || | | ||| || | ||| |||||| ||||| Sbjct 1501 GTAAACAAGCCTAGTCAACAGCATG--TTCAGTCTATCATTGATGATGCCGTCAAAATTG 1558 Query 102144 AACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGA 102203 |||||||||| | || | | | |||||||| || | | || |||||||| | | Sbjct 1559 AACAAGAATTCTTAACTGATGCTCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTA 1618 Query 102204 TGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGC 102263 |||| || |||||||||||||| |||||| || | || || | || || |||| Sbjct 1619 TGAGGCAATACATTGAATTTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGC 1678 Query 102264 ACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCA 102323 || |||| || || || |||||||| || || || || ||| ||| |||| Sbjct 1679 TTTACAATGCAGAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCA 1738 Query 102324 ACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||| |||||||||||||| | |||||| ||| Sbjct 1739 ACTTCTTTGAAAAGAGAGTAGGCGAGTACCAA 1770 >seq2738736 Length=4073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| || ||| ||||| || | || || ||| || |||||||| | ||| ||| Sbjct 1806 AGAACAACCCAAATGATCGACGCATAATCATGTGTGCTTGGAATCCGGTTGATGTTCTTA 1865 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGC-TCAATTTTATGTGGCTAATGGAGAATTG 35635 ||||| | |||||||||||| || ||| ||| ||||||||||||||||||||| | Sbjct 1866 AAATGGCCTTGCCTCCATGCCAC-TGTCTGTGTCAGTTTTATGTGGCTAATGGAGAACTC 1924 Query 35636 TCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCA 35695 || |||||| | || || || | |||| | || | || || || ||||| ||||| Sbjct 1925 TCTTGCCAGCTATACCAAAGATCAGCAGATATGGGTCTTGGAGTTCCTTTCAACATTGCT 1984 Query 35696 TCATACTCTCTTCTGACTCATCTGATGGCC 35725 || ||||||| || | |||| ||| Sbjct 1985 AGTTATGCTCTTCTCACCTACATGATTGCC 2014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 954707598769960