Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2732095 284 1e-71 >seq2732095 Length=3591 Score = 284 bits (314), Expect = 1e-71 Identities = 535/786 (68%), Gaps = 3/786 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||||||||| ||||||||| || || || | ||||| || || || ||||| || Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 || | ||||| ||||||||||| ||||| ||||| ||||||||| || | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 || | || || | | |||||| || ||||| || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || ||||| || || || ||||| |||| | |||||||||||||| || Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 |||| || ||| | ||| | || ||| || | || ||||| || ||| Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAAC 1488 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 || | ||| || || || ||| ||||| || || || |||||||| || ||| Sbjct 1487 ATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAG 1428 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 || || || ||||| |||||||| || || |||||||| || | ||| || || ||| Sbjct 1427 GTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTG 1368 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 ||||| || ||||| || |||||||||||||| | | || |||||| || | ||| Sbjct 1367 AAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCA 1308 Query 33756 TGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 || ||||| | ||||||| || ||||||||||| |||||||||| || || | | Sbjct 1307 TGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACG 1248 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 ||||| || || |||| ||| | | ||| | | || || | ||| | | ||| Sbjct 1247 GCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTG 1188 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| || || ||||| || || || || || || || || ||||| || || Sbjct 1187 TACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCT 1128 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTG 33992 | || || |||||| || |||| || | | ||||||||| || || |||||| Sbjct 1127 GGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAA 1068 Query 33993 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 34052 || || ||||| |||| ||||| || |||| | | || || | ||||||| | Sbjct 1067 GCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCC 1008 Query 34053 CAATCA 34058 || ||| Sbjct 1007 CAGTCA 1002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||| | ||||||||||||||| ||||||||||| || | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 |||| || ||| | || ||||||||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608162014623360