Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2732095 210 2e-49 >seq2732095 Length=3591 Score = 210 bits (232), Expect = 2e-49 Identities = 521/783 (67%), Gaps = 11/783 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 ||||| || || | |||| ||| || || || || ||||| || || ||||| | Sbjct 1772 TTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTT 1713 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| ||| ||| ||||| | | ||||| | | || ||||| |||| ||| | Sbjct 1712 TCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAGA 1653 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 | | |||||| || ||||| || || || ||| | | ||| |||||||| || ||| Sbjct 1652 AGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAGA 1593 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | |||| | || || || || | ||| || || || |||||| || || Sbjct 1592 TTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATA 1533 Query 11579 GACGTTATAACTTCCT-TAGATGGTGGATGT--AATAAATGTTTAAACATTAAACACGCA 11635 ||| ||| | || | || | ||| | ||||| || ||||| | ||| ||| Sbjct 1532 GACTG---AACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACATGAGACAGGCA 1476 Query 11636 AAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGC 11695 || ||| || | |||||| || || |||| |||||| ||| || | || ||| Sbjct 1475 AAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGC 1416 Query 11696 ATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCC 11755 |||| || ||||| || | |||||| || |||||||| ||||| ||||| || || Sbjct 1415 ATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACCT 1356 Query 11756 TCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTAGATA-TCCAT 11812 |||||||| ||||| || | | | ||| |||| || | || | | | ||||| Sbjct 1355 TCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCAT 1296 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | ||||| ||||| |||||||| || || || || || | || || || | Sbjct 1295 CTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAG- 1237 Query 11873 TGCATTTT-TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGA 11931 | ||||| |||| | ||||| | || || | || | |||||| |||||||| Sbjct 1236 TCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACT 1177 Query 11932 ATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTAC 11991 || ||||||||||| || ||||| || ||||| || |||| ||| |||| | || || Sbjct 1176 GTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAAC 1117 Query 11992 ATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || | ||||| || | | ||| ||||| ||||| |||||| || || ||||| Sbjct 1116 TTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAA 1057 Query 12052 TGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAA 12111 ||| || | ||| || || | | | || || | | | ||||||||| ||| |||| Sbjct 1056 TGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCCCAGTCACCTAA 997 Query 12112 ATC 12114 ||| Sbjct 996 ATC 994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452415090129280