Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2732095 293 3e-74 seq2683473 87.8 2e-12 seq2129313 87.8 2e-12 >seq2732095 Length=3591 Score = 293 bits (324), Expect = 3e-74 Identities = 542/790 (69%), Gaps = 14/790 (2%) Strand=Plus/Minus Query 35812 TTAAAAATCAACATCTAGAGAAAA---ATGATTGTCTT--CTTGAGACATAACTCCCATT 35866 |||||||||| |||| |||| || | | | |||| ||||| ||||||||| | Sbjct 1830 TTAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTGCTTGA--CATAACTCCACAT 1773 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| || || || | ||||| || || || |||||||| || | ||||| ||| Sbjct 1772 TTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTT 1713 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| || |||||||| |||| |||| || | | | || | || || Sbjct 1712 TCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAGA 1653 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | |||||| |||||||| || ||| |||| | |||| ||||| || || || Sbjct 1652 AGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAGA 1593 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || || ||||| |||| | |||||||||||||| ||| || || || ||| Sbjct 1592 TTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATA 1533 Query 36107 GATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 || || | || ||| || || ||| | |||| || ||||| | ||| || | Sbjct 1532 GACTGAACATGCTGTTGACTAGGCTTGTTTACCA--AATGCTTGAACATGAGACAGGCAA 1475 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 | || ||| ||||| || || || |||||||| ||| ||| || || || |||| Sbjct 1474 AGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGCA 1415 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | |||||||| || || |||||||| || | ||||| || || |||||||| |||| Sbjct 1414 TCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACCTT 1355 Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG---TATCCACT 36341 | || || ||||||||||| | | || |||||| ||| | ||||| ||||| Sbjct 1354 CCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCATC 1295 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 | ||||||| || ||||||||||| |||||||||| ||||| | ||||| || || Sbjct 1294 TCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAGTC 1235 Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461 |||| ||| | | ||| | | || || | || | | ||| |||||||| | Sbjct 1234 TATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACTGT 1175 Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521 | || ||||| || || ||||| || || || || ||||| || || | || || |||| Sbjct 1174 GGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAACTT 1115 Query 36522 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 || || |||| || | | ||||||||| || || || ||| || || ||||| | Sbjct 1114 CTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAATG 1055 Query 36582 CCAATACATG 36591 ||| ||||| Sbjct 1054 CCAGCACATG 1045 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 36644 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 36703 ||||| | ||||||||||||||| ||||||||||| || | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 36740 |||| || ||| | |||||||| ||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 >seq2683473 Length=2397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 1602 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 1661 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890 || || ||||| || || || ||| |||| || |||||||| Sbjct 1662 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 1702 >seq2129313 Length=838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 793 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 734 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890 || || ||||| || || || ||| |||| || |||||||| Sbjct 733 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635542252262080