Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2750648 118 1e-21 seq2732657 100 3e-16 >seq2750648 Length=12224 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| || ||||| ||||| |||||||||||||||||||| | || | || Sbjct 11035 CAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATC 10976 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||||| || | || | || || ||||||||||| || ||||||||||| Sbjct 10975 TTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTC 10916 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||||||||||| || | ||| | ||| || | || || || | || | || Sbjct 10915 TTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGT 10856 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || || | |||||||||||||||||||| Sbjct 10855 CTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||||| || || ||||| || || || || ||||| ||||| Sbjct 2709 ACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCCATCTTCC 2768 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| ||||||| | ||||| || ||||| || ||||| || || | Sbjct 2769 AGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTTATCTTGG 2828 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | ||| | ||||| | || || || || | ||| | ||||| Sbjct 2829 ATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGATGGTCTTT 2888 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||||| || ||||| |||||| Sbjct 2889 CCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479007385030400