Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2732095 266 4e-66 >seq2732095 Length=3591 Score = 266 bits (294), Expect = 4e-66 Identities = 513/756 (68%), Gaps = 3/756 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||||||||| ||||||||| || || || | ||||| || || || ||||| || Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || | ||||| ||||||||||| ||||| ||||| |||| |||| || | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 || | || || | | ||| || |||||||| || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || || || ||||| |||| | |||||||||||||| || Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 49953 ||||| || ||||| ||| | || ||| || | | ||||| || ||| Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAAC 1488 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 || | ||| || || || ||| ||||| || || || |||| ||| ||| ||| Sbjct 1487 ATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAG 1428 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 || || || ||||| |||||||| || || |||||||| || | ||||| || || Sbjct 1427 GTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTG 1368 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA 50133 ||||| || ||||| || || |||||||||| | | || ||||||| || | ||| Sbjct 1367 AAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCA 1308 Query 50134 TGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 || ||||| | ||||||| || ||||||||||| |||||||||| || || | | Sbjct 1307 TGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACG 1248 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| || || |||| ||| | | ||| | | || || | ||| | | ||| Sbjct 1247 GCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTG 1188 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || || ||||| || || || || || || || || ||||| || || Sbjct 1187 TACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCT 1128 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || || |||||| || |||| || | | ||||||||| || || || ||| Sbjct 1127 GGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAA 1068 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGT 50406 || || ||||| |||| ||||| || |||||| Sbjct 1067 GCAGCGAAAAATGCCAGCACATGGGAAATGAAATGT 1032 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||| | ||| ||||||||||| ||||||||||| || | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 |||| || ||| | || ||||||||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693571917407680