Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2732095 291 8e-74 >seq2732095 Length=3591 Score = 291 bits (322), Expect = 8e-74 Identities = 560/817 (69%), Gaps = 8/817 (1%) Strand=Plus/Minus Query 13556 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTT 13615 |||| || | || ||||| || |||||| || || | ||||| |||||||||||||| Sbjct 1797 GTCTGTGCTTGACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTT 1738 Query 13616 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACAC 13675 |||||||| || || ||||| |||||||| || ||||||||||| || | | | Sbjct 1737 GGTTTTACCCTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAG 1678 Query 13676 TTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACAT 13735 |||||||| ||||| || | || | | ||| |||| ||| ||||| ||||| ||| Sbjct 1677 CTTATCACAGCCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCAT 1618 Query 13736 TAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTC 13795 | | |||| |||||||| || || || ||||| | || ||||| ||||||| ||| Sbjct 1617 AAGAACACAGTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTC 1558 Query 13796 TATAGACACAGCCTCTTTTATAATA-ATTGTAATAATCTCATTAGAAGGAGGATATTTTA 13854 || || || || | || ||| | || || | || | | ||| | | | Sbjct 1557 AATTTTGACGGCATCATCAATGATAGACTG-AACATGCTGTTGACTAGGCTTGTTTACCA 1499 Query 13855 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 13914 ||| || || || | ||| ||||| ||| ||||| || ||||| || || | || Sbjct 1498 AATGCTTGAACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATT 1439 Query 13915 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAA 13974 | || ||| || | || ||||||| || ||||| || | |||||| || ||||||| Sbjct 1438 CATTGCTAAAGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAA 1379 Query 13975 ATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCA-AAC 14033 | || ||| ||||| || || || || |||||||| || || | ||||| || ||| Sbjct 1378 AGGAACCGCTGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAAC 1319 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | || ||| | | |||||| | |||||| |||| || ||||| | | || | Sbjct 1318 TA-GCAGTTTCATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGC 1260 Query 14094 ATTGTTTCAATAGCATTAAATAAA-TATTCCTTCTCTTTAGTACTTGAAATGTATGTATC 14152 | || |||| ||||| || | |||| | |||| || | ||||| || | Sbjct 1259 AAGGTCTCAACGGCATTGAACAGTCTATTTTGT-TCTTCAGAGTCTCTGATGTAGGTGTT 1201 Query 14153 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAA 14212 || ||||| || ||||||||| ||| || |||||||| || || || ||||||||||| Sbjct 1200 GATGAGTAAACTGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAA 1141 Query 14213 GCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14272 |||||| ||||| | ||| ||||| | | ||||| ||| | | |||||||||||| Sbjct 1140 GCATCTTGCTTCTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAAC 1081 Query 14273 TATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 || |||||| ||| || |||||||||| | | ||| || | | ||| |||| Sbjct 1080 AATCCCATCAGAAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATC 1021 Query 14333 GTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGA 14369 || ||||| | ||| || |||||||| |||||| Sbjct 1020 CTTAAGTTTATCCCAGTCACCTAAATCCT--GAAAGA 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463233080420800