Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2732095 273 2e-68 >seq2732095 Length=3591 Score = 273 bits (302), Expect = 2e-68 Identities = 561/822 (68%), Gaps = 18/822 (2%) Strand=Plus/Minus Query 13344 GTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTT 13403 |||| || | || ||||| || |||||| || || | ||||| |||||||| ||||| Sbjct 1797 GTCTGTGCTTGACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTT 1738 Query 13404 AGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACAC 13463 |||||||| || || ||||| |||||||| || || |||||||| || | | | Sbjct 1737 GGTTTTACCCTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAG 1678 Query 13464 TTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACAT 13523 |||||||| ||||| || | | | | ||| |||| ||| ||||| ||||| ||| Sbjct 1677 CTTATCACAGCCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCAT 1618 Query 13524 TAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTC 13583 | | |||| |||||||| || || || ||||| | || |||||| ||||||| ||| Sbjct 1617 AAGAACACAGTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTC 1558 Query 13584 TATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAG 13643 || || || || | || ||| || || | || || | ||| | |||| Sbjct 1557 AATTTTGACGGCATCATCAATGATAGACTGAACA-TGCTGTTG--ACTAGGCTTGTTTAC 1501 Query 13644 ---ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 ||| || || || | ||| ||||| ||| ||||| || ||||| || || | Sbjct 1500 CAAATGCTTGAACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAA 1441 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 ||| || ||| || | || ||||||| || ||||| || | |||||| || ||||| Sbjct 1440 TTCATTGCTAAAGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGC 1381 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA-A 13819 || || ||| ||||| || || || || |||||||| || || | ||||| || | Sbjct 1380 AAAGGAACCGCTGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATA 1321 Query 13820 ACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 13879 || | || ||| | | |||||| | |||||| |||| || ||||| | | || Sbjct 1320 ACTA-GCAGTTTCATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAG 1262 Query 13880 CCATTGTTTCGATTGCATTGAATAA---ATGTTCCTTCTCTTTAGTACTTGAAATGTATG 13936 || || || | |||||||| | || || |||| ||| ||| |||| | Sbjct 1261 GCAAGGTCTCAACGGCATTGAACAGTCTATTTTG-TTCTTCAGAGTCTCTGA--TGTAGG 1205 Query 13937 TATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCAT 13996 | | || ||||| || ||||||||| ||| || ||||| || || || || ||||||| Sbjct 1204 TGTTGATGAGTAAACTGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCAT 1145 Query 13997 AAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG-TTTTCA 14055 |||| ||||| ||||||| ||| || || | | ||||| || | |||| |||||| Sbjct 1144 AAAAGCATCTTGCTTCTGGAACTTGAACTTCTTGGCAGAATCTCTC-GACAAGATTTTCA 1086 Query 14056 TTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT 14115 |||||||| |||||| ||| || |||||||||| | | ||| || | | ||| Sbjct 1085 TTAACAATCCCATCAGAAGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCC 1026 Query 14116 TCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGA 14157 |||| || ||||| | ||| || ||||||||| |||||| Sbjct 1025 TCATCCTTAAGTTTATCCCAGTCACCTAAATCCT--GAAAGA 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462133050559680