Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2732657 107 1e-18 seq2750648 84.2 2e-11 >seq2732657 Length=3626 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| ||| |||||| || | ||||||||| ||||||||||| | || ||| Sbjct 2481 ACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCC 2540 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || || || ||||||||||| | ||||||||| | || | ||||| || || | Sbjct 2541 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 2600 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| ||| || | ||| || || | ||| || || | ||||| |||||| Sbjct 2601 ATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTT 2660 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||||||||| || ||||| Sbjct 2661 CCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | ||| || || || | |||||||| ||||| ||||| | || || Sbjct 3164 CACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTC 3223 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || ||||| ||||||||||| | |||||| || | || | ||||| || || || Sbjct 3224 CAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATC-CT 3282 Query 43020 G-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTT 43078 | ||| | || || | ||| || || || ||||| || | || || || | Sbjct 3283 GAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCT 3342 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| |||||||||||||| Sbjct 3343 TTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| ||||| | |||||||| | || ||||| || | |||||||| || Sbjct 1778 GCCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGA 1837 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||||||| | || |||| || ||||| ||||| |||| || ||| ||||| | || Sbjct 1838 CAATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGG 1897 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| |||| || | ||| |||||| | || || Sbjct 1898 AATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAAC 1957 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || ||||| || || ||||| Sbjct 1958 TTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq2750648 Length=12224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || |||||||| || || || ||||| | || ||||| | ||| | | Sbjct 11040 AGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGT-AATACATTT 10982 Query 42952 -TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTC 43010 | || || |||||||| ||||| ||||| |||||||||||||||| || | |||||| Sbjct 10981 ATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTC 10922 Query 43011 TTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGT 43070 ||| || || | ||| | | | | | ||| || || | || || |||| || Sbjct 10921 TTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGT 10862 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || || || || || ||||| || || ||||||||| Sbjct 10861 AATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368584450165296