Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2732095 268 1e-66 seq2683473 86.0 8e-12 seq2129313 86.0 8e-12 >seq2732095 Length=3591 Score = 268 bits (296), Expect = 1e-66 Identities = 508/745 (68%), Gaps = 7/745 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||||||||| ||||||||| || || || | ||||| || || || || || || Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 || | ||||| ||||||||||| ||||| ||||| |||| |||| || | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 || | || || | | |||||| | ||||| || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || || || || || ||||| |||| | |||||||||||||| ||| Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 41999 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 42056 || || || ||||| || | || ||| || || ||| | |||| || | Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCA--AATGCTTGA 1490 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | ||| || || || ||| ||||| ||||| || |||||||| ||| || Sbjct 1489 ACATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAA 1430 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || ||||| |||||||| || || |||||||| || | ||||| || || Sbjct 1429 AGGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGC 1370 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT 42236 ||||| || ||||| || || ||||||||||| | | || |||||| ||| | | Sbjct 1369 TGAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTT 1310 Query 42237 CATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| ||||| | ||||||| || ||||||||||| |||||||||| || || | Sbjct 1309 CATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAA 1250 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 |||||| || || |||| ||| | | ||| | | || || | ||| | | || Sbjct 1249 CGGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAAC 1190 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | |||||||| || || ||||| || || || || || || || || ||||| || | Sbjct 1189 TGTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTT 1130 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | | ||| || |||||| || |||| || | | |||||| || || || || ||| Sbjct 1129 CTGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAG 1070 Query 42474 TGGCTGCAAAAAACGCCAATACATG 42498 || || ||||| |||| ||||| Sbjct 1069 AAGCAGCGAAAAATGCCAGCACATG 1045 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||| | ||| |||||||| || ||||||||||| ||| | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 ||||||| ||| | |||||||||||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 >seq2683473 Length=2397 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||| ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 1601 AATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCT 1660 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || || ||||| || || || || | || || |||||||| Sbjct 1661 ATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 1702 >seq2129313 Length=838 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||| ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 794 AATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCT 735 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 || || ||||| || || || || | || || |||||||| Sbjct 734 ATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648062816861120