Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2750648 145 7e-30 seq2732657 113 4e-20 seq2442759 98.7 1e-15 seq1400646 86.0 6e-12 >seq2750648 Length=12224 Score = 145 bits (160), Expect = 7e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 |||||| ||||||||||||||||||||||| ||||| ||||| | || | || Sbjct 11035 CAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATC 10976 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||||||| || | || | || || ||||||||||| || ||||||||||| Sbjct 10975 TTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTC 10916 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||||||||| || | ||| | || || | ||||||||| | ||| | || Sbjct 10915 TTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGT 10856 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||||||||||||||||||| Sbjct 10855 CTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| |||||||| || || ||||||||||| || ||| | | ||||| Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCC 1856 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || || || ||| ||||||| | |||||||| || || ||||| || ||||| Sbjct 1857 AGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGG 1916 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| ||||| | ||| | ||||| | |||||| ||||| | ||| | ||||| Sbjct 1917 ATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTTT 1976 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| || |||||| Sbjct 1977 CCAGTGAGGGTCTTCACGAAGATCTGCATA 2006 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 2709 ACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCCATCTTCC 2768 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || |||||||||||| ||||||| | ||||| || ||||| || ||||| || || Sbjct 2769 AGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTTATCTTGG 2828 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | ||||| | ||||||||||| | || | ||||| Sbjct 2829 ATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGATGGTCTTT 2888 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| || ||||| |||||| Sbjct 2889 CCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| |||||||| || || |||||||| || || ||||| ||||| |||||| Sbjct 2943 TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGT 3002 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| ||||||| | |||||| || || || || ||||| || || || || Sbjct 3003 TTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 3062 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | || || | ||||| || |||| || | ||||| || || Sbjct 3063 GCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTG 3122 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||| || || || |||||| Sbjct 3123 AGGGTTTTCACAAAGATCTGCATA 3146 >seq2442759 Length=1285 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | || ||||||| ||||||||| || || ||||||||||| | Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| || || || |||||| |||||| | ||||| ||||| || Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || || ||| |||| | ||| | ||||| | || ||||| Sbjct 207 ATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACC 266 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || | ||| || || || || ||||| Sbjct 267 TCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCAT 313 >seq1400646 Length=492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | ||||||||| || | || | || || ||||||||||| || ||| ||||| Sbjct 10 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTTG 69 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || |||| |||||| || | ||| | | | | ||||||||| | | | | Sbjct 70 TCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAATT 129 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||||||||||||||||||| Sbjct 130 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 489581267571840