Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2732095 132 7e-26 seq2736869 95.1 2e-14 >seq2732095 Length=3591 Score = 132 bits (146), Expect = 7e-26 Identities = 301/446 (67%), Gaps = 19/446 (4%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || || || || ||||| ||| ||||| || |||||||||||| Sbjct 1339 GCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTC 1398 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || || ||||| || || || || || || || || || | || || Sbjct 1399 AAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAA 1458 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612 || || ||| |||||||||| ||| |||| ||| || || | || || Sbjct 1459 GGTCTTCACACTGACTTTGCCTGTCTCATGTT---CAAGCATTTGGTAAACAAGCCTAG- 1514 Query 125613 TC--CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGT 125670 || |||| ||| || |||| ||| |||||||| | || |||||||| | Sbjct 1515 TCAACAGC-ATGTTCAGTCTATCA---TTGAT---GATGCCGTCAAAATTGAACAAGAAT 1567 Query 125671 TTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGT 125730 | |||| || | || || |||| | ||||| |||||||| || ||| | | | Sbjct 1568 TCTTAACTGATGCTCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTATGAGGCAAT 1627 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG---CAAGATTTACA 125787 |||| || ||||| ||||||||||| || | | | | ||| | ||| |||||| Sbjct 1628 ACATTGAATTTGTTGCAGATCGTCTTCT---TGTGGAGCTAGGCTGTGATAAGCTTTACA 1684 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 | || ||||||| ||||| |||||| | |||||| || |||||||| |||||||| | Sbjct 1685 ATGCAGAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTTCT 1744 Query 125848 TCGAGAAGAAGGTCAGCGAGTACAAA 125873 | || |||| || |||||||| || Sbjct 1745 TTGAAAAGAGAGTAGGCGAGTACCAA 1770 >seq2736869 Length=3912 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 127108 TAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATG 127167 |||||||||||||| || ||||| | || |||||||| || ||||| ||||||| Sbjct 2297 TAAAAGATGACTCCACTTCTGGGACCACGCAGGGTCTTGTGAGTGGTAGTTGTCACAACA 2238 Query 127168 TCACAATACTCAAAGGGGCCAGGAATGA---CTTTGCCCGCAATCAAGCCCGCAATGTGT 127224 |||||||| ||||| || || | ||| || || || | ||||| | || Sbjct 2237 TCACAATATTCAAAAGGATTAGAAGTGAGACCTGTG---GCTACTAAGCCACTCACATGC 2181 Query 127225 GCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTATAG 127284 | || || ||||||| || || || | |||| |||||||||||||| | ||| Sbjct 2180 GACATGTCTGCCATCAACATCGATCCATTTTCATCACATATCTCTCGGAATCGCTTGTAG 2121 Query 127285 TCCAAGCGCCGAGGATAGCAACTG 127308 |||||| | ||||| ||||||||| Sbjct 2120 TCCAAGTGGCGAGGGTAGCAACTG 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715578694573120