Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2732657 136 3e-27 seq2750648 127 1e-24 seq2442759 105 5e-18 >seq2732657 Length=3626 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | || |||||||| ||||| ||||| || ||||||||||| Sbjct 3147 CCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 3206 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||| || || |||||||| | ||||| | |||||||| |||| Sbjct 3207 AAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 3266 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || ||| ||||| ||| ||| | || |||||||| | ||| || Sbjct 3267 ATGCCTTCCTTATCCTGAATCTTTGC-CTTCACATTCTCAATGGTATCAGAAGGTTCGAC 3325 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 3326 TTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCATA 3374 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || | ||||||||| || || || || || || || ||||| || Sbjct 2235 CCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGAC 2294 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || ||||| || | |||| | || ||||| || Sbjct 2295 AGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 2354 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||||||| | || ||||| || | || || Sbjct 2355 ATACCTTCCTTGTCTTGAATCTTTGC-CTTTACATTCTCAATGGTGTCTGAAGGCTCCAC 2413 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||| |||||| ||||| ||||| || || || ||||||||||||||| Sbjct 2414 TTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCATA 2462 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||||| || || ||||| || || || || || || ||||| | || Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGT--CTG 2748 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| | ||||| ||||| | |||| | || ||||| | Sbjct 2749 ACAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAG 2808 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| || || || || ||| || ||| |||| ||||| || |||| Sbjct 2809 GAATACCTTCCTTATCTTGGATCTTAGCT-TTGACATTTTCAATGGTGTCAGATGGTTCT 2867 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| ||||| || || || || ||||| ||||| || |||||| Sbjct 2868 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | || | ||||| || || || || || |||||||||| | Sbjct 3375 CCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAAT--CAG 3432 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| || || || ||||| | ||||| | |||||||| | Sbjct 3433 ACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAG 3492 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| || || || || ||| || ||| |||| |||||||| |||| Sbjct 3493 GAATACCTTCCTTATCTTGGATCTTAGCT-TTGACATTTTCAATGGTATCTGATGGTTCT 3551 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||| ||||| || ||||| || || || || || || |||||| Sbjct 3552 ACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCATA 3602 >seq2750648 Length=12224 Score = 127 bits (140), Expect = 1e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 15131 TGTCTGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAA 15190 ||| | || ||||| | ||| ||||| ||||||| || || |||||||| ||||| ||| Sbjct 11055 TGTATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAA 10996 Query 15191 TCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCG 15250 || | | | | | |||||||||||||| || ||| | || || || ||||| ||| Sbjct 10995 TCAGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCG 10936 Query 15251 TTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTT 15310 ||||| ||||||||||| ||||| || | ||||||| || || | | Sbjct 10935 GGAGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGAT 10876 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| ||||| || ||||| || || |||||||| || |||||||| Sbjct 10875 TCTACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2442759 Length=1285 Score = 105 bits (116), Expect = 5e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| | || |||||||| || || || || || |||||||||| || Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAAT--CTG 144 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| | || || ||||| | ||||| | || |||||| || Sbjct 145 ACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTG 204 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| || || || || || ||||| ||||||| |||| ||||| || | ||| Sbjct 205 GAATGCCCTCCTTATCTTGGATCTTTGC-CTTTACATTTTCGATGGTGTCTGAAGGCTCT 263 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || | ||||||||| || || || || || || ||||| || ||||| || Sbjct 264 ACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350037394939992