Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2732657 118 9e-22 seq2750648 113 4e-20 >seq2732657 Length=3626 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| ||||| |||||||| || ||||||||||| || || | |||||| Sbjct 3164 CACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTC 3223 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||| || ||||| ||| |||| | ||||||||| || || | |||||| || || Sbjct 3224 CAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTG 3283 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| ||||| | ||| | ||| |||||| ||||| || ||||| || Sbjct 3284 AATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTT 3343 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | |||||||||||||||||||| Sbjct 3344 TCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 >seq2750648 Length=12224 Score = 113 bits (124), Expect = 4e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||||||| | ||||||||||||||| ||||| ||||| ||| |||| | Sbjct 11037 CTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTA 10978 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| |||||||| || || |||| | | |||||||||| || | ||||||||| Sbjct 10977 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTG 10918 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||||||||||| | | | | | || || | ||| ||| | ||||| Sbjct 10917 TCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATT 10858 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA 20213 || || || || | ||||| || || ||||||||| ||| Sbjct 10857 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTATTA 10818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405520831782072